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"Cat's Cradling'' the 3D Genome by the Act of LncRNA Transcription Journal Article
5' EXON REQUIREMENT FOR SELF-SPLICING OF THE TETRAHYMENA-THERMOPHILA PRE-RIBOSOMAL RNA AND IDENTIFICATION OF A CRYPTIC 5' SPLICE SITE IN THE 3' EXON Journal Article
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs Journal Article
linc-HOXA1 is a noncoding RNA that represses Hoxa1 transcription in cis Journal Article
A HAMMERHEAD RIBOZYME ALLOWS SYNTHESIS OF A NEW FORM OF THE TETRAHYMENA RIBOZYME HOMOGENEOUS IN LENGTH WITH A 3' END BLOCKED FOR TRANSESTERIFICATION Journal Article
A HIGHLY CONSERVED MOUSE GENE WITH A PROPENSITY TO FORM PSEUDOGENES IN MAMMALS Journal Article
A Highly Coupled Network of Tertiary Interactions in the SAM-I Riboswitch and Their Role in Regulatory Tuning Journal Article
A Kinase-Independent Role for Cyclin-Dependent Kinase 19 in p53 Response Journal Article
A Large Intergenic Noncoding RNA Induced by p53 Mediates Global Gene Repression in the p53 Response Journal Article
A Modeling Framework for Generation of Positional and Temporal Simulations of Transcriptional Regulation Journal Article
A RHODOPSIN GENE EXPRESSED IN PHOTORECEPTOR CELL R7 OF THE DROSOPHILA EYE - HOMOLOGIES WITH OTHER SIGNAL-TRANSDUCING MOLECULES Journal Article
A Redox-Responsive Transcription Factor Is Critical for Pathogenesis and Aerobic Growth of Listeria monocytogenes Journal Article
A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus Journal Article
A Transcriptional Enhancer from the Coding Region of ADAMTS5 Journal Article
A comparative evaluation of beta-catenin and plakoglobin signaling activity Journal Article
A feed-forward repression mechanism anchors the Sin3/histone deacetylase and N-CoR/SMRT corepressors on chromatin Journal Article
A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs Journal Article
A histone H3 lysine 27 demethylase regulates animal posterior development Journal Article
A new twist on cell growth control Journal Article
A stress-responsive glutathione S-transferase confers resistance to oxidative stress in Caenorhabditis elegans Journal Article
A switch in time: Detailing the life of a riboswitch Journal Article
A trans-acting Variant within the Transcription Factor RIM101 Interacts with Genetic Background to Determine its Regulatory Capacity Journal Article
A transcription-dependent switch controls competence of adult neurons for distinct modes of axon growth Journal Article
ABF1 IS A PHOSPHOPROTEIN AND PLAYS A ROLE IN CARBON SOURCE CONTROL OF COX6 TRANSCRIPTION IN SACCHAROMYCES-CEREVISIAE Journal Article
ANALYSIS INVIVO OF TRANSLATIONAL MUTANTS OF THE RIIB CISTRON OF BACTERIOPHAGE-T4 Journal Article
Acetyl coenzyme A stimulates RNA polymerase II transcription and promoter binding by transcription factor IID in the absence of histones Journal Article
Actin is part of pre-initiation complexes and is necessary for transcription by RNA polymerase II Journal Article
Activating RNAs associate with Mediator to enhance chromatin architecture and transcription Journal Article
Alcohol differentially affects c-Fos expression in the supraoptic nucleus of long-sleep and short-sleep mice Journal Article
Allele-Specific DNA Methylation and Its Interplay with Repressive Histone Marks at Promoter-Mutant TERT Genes Journal Article
Allele-specific proximal promoter hypomethylation of the telomerase reverse transcriptase gene (TERT) associates withTERTexpression in multiple cancers Journal Article
Alternative Lengthening of Telomeres is characterized by reduced compaction of telomeric chromatin Journal Article
An 8 nt RNA triggers a rate-limiting shift of RNA polymerase II complexes into elongation Journal Article
An RNA transcriptional regulator templates its own regulatory RNA Journal Article
Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe Journal Article
Application of a fed-batch system to produce RNA by in vitro transcription Journal Article
Application of solution equilibrium analysis to in vitro RNA transcription Journal Article
Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH Journal Article
Automodification switches PARP-1 function from chromatin architectural protein to histone chaperone Journal Article
B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes Journal Article
B2 RNA binds directly to RNA polymerase II to repress transcript synthesis Journal Article
B2 RNA represses TFIIH phosphorylation of RNA polymerase II Journal Article
BACTERIOPHAGE-T4 REGA PROTEIN - PURIFICATION OF A TRANSLATIONAL REPRESSOR Journal Article
BRAIN-DERIVED NEUROTROPHIC FACTOR-TRANSDUCED FIBROBLASTS - PRODUCTION OF BDNF AND EFFECTS OF GRAFTING TO THE ADULT-RAT BRAIN Journal Article
Beating the heat: A translation factor and an RNA mobilize the heat shock transcription factor HSF1 Journal Article
Biochemical Properties and Biological Functions of FET Proteins Journal Article
Blocking transcription through a nucleosome with synthetic DNA ligands Journal Article
CATALYSIS OF RNA CLEAVAGE BY A RIBOZYME DERIVED FROM THE GROUP-I INTRON OF ANABAENA PRE-TRNA(LEU) Journal Article
CBX3 regulates efficient RNA processing genome-wide Journal Article
CCAAT/enhancer binding protein-delta expression is increased in fast skeletal muscle by food deprivation and regulates myostatin transcription in vitro Journal Article
CDK8 Kinase Phosphorylates Transcription Factor STAT1 to Selectively Regulate the Interferon Response Journal Article
CDK8 is a positive regulator of transcriptional elongation within the serum response network. Journal Article
CDK8 is a stimulus-specific positive coregulator of p53 target genes Journal Article
CDK8: a positive regulator of transcription. Journal Article
CHARACTERIZATION OF RNA HAIRPIN LOOP STABILITY Journal Article
CHEMICAL SYNTHESIS AND BIOLOGICAL STUDIES ON MUTATED GENE-CONTROL REGIONS Journal Article
CHROMATIN STRUCTURE AT THE REPLICATION ORIGINS AND TRANSCRIPTION-INITIATION REGIONS OF THE RIBOSOMAL-RNA GENES OF TETRAHYMENA Journal Article
CHROMOSOMAL ASSIGNMENT OF THE MOUSE KAPPA-LIGHT CHAIN GENES Journal Article
CLONING AND MOLECULAR CHARACTERIZATION OF A METABOLIC GENE WITH DEVELOPMENTAL FUNCTIONS IN DROSOPHILA .1. ANALYSIS OF THE HEAD FUNCTION OF PUNCH Journal Article
CLONING THE COMPLETE RIIB GENE OF BACTERIOPHAGE-T4 AND SOME OBSERVATIONS CONCERNING ITS MIDDLE PROMOTERS Journal Article
COMPARISON OF ENDOGENOUS MURINE LEUKEMIA-VIRUS PROVIRAL ORGANIZATION AND RNA EXPRESSION IN 3-METHYLCHOLANTHRENE-INDUCED AND SPONTANEOUS HYMIC LYMPHOMAS IN RF AND AKR MICE Journal Article
CONTROL OF ADENOVIRUS E1B MESSENGER-RNA SYNTHESIS BY A SHIFT IN THE ACTIVITIES OF RNA SPLICE SITES Journal Article
CUUCGG HAIRPINS - EXTRAORDINARILY STABLE RNA SECONDARY STRUCTURES ASSOCIATED WITH VARIOUS BIOCHEMICAL PROCESSES Journal Article
Calcineurin activates interleukin-6 transcription in mouse skeletal muscle in vivo and in C2C12 myotubes in vitro Journal Article
Cancer-linked satellite 2 DNA hypomethylation does not regulate Sat2 non-coding RNA expression and is initiated by heat shock pathway activation Journal Article
Case-control and within-family tests for association between 5HTTLPR and conduct problems in a longitudinal adolescent sample Journal Article
Casein Kinase 1δ Stabilizes Mature Axons by Inhibiting Transcription Termination of Ankyrin Journal Article
Cell-Type-Specific Chromatin States Differentially Prime Squamous Cell Carcinoma Tumor-Initiating Cells for Epithelial to Mesenchymal Transition Journal Article
Characterisation of an mRNA encoding a human ribosomal protein homologous to the yeast L44 ribosomal protein. Journal Article
Characterization of the sequence and architectural constraints of the regulatory and core regions of the human interleukin-2 promoter Journal Article
Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription Journal Article
Chromatin and transcriptional signatures for Nodal signaling during endoderm formation in hESCs Journal Article
Chromosomal sites of integration of simian virus 40 DNA sequences mapped by in situ hybridization in two transformed hybrid cell lines. Journal Article
Common variants in signaling transcription-factor-binding sites drive phenotypic variability in red blood cell traits Journal Article
Compensatory regulation among ER chaperones in C. elegans Journal Article
Competing promoters in prokaryotic transcription. Journal Article
Conformational switches involved in orchestrating the successive steps of group I RNA splicing Journal Article
Constitutively active mitogen-activated protein kinase kinase 1 (MAPKK1) and MAPKK2 mediate similar transcriptional and morphological responses Journal Article
Contacts in context: promoter specificity and macromolecular interactions in transcription. Journal Article
Coordinated Action of Nap1 and RSC in Disassembly of Tandem Nucleosomes Journal Article
Core transcriptional regulatory circuitry in human hepatocytes Journal Article
DETECTION AND CHARACTERIZATION OF A FACTOR WHICH RESCUES SPLICEOSOME ASSEMBLY FROM A HEAT-INACTIVATED HELA-CELL NUCLEAR EXTRACT Journal Article
DETERMINANTS OF THE 3' SPLICE SITE FOR SELF-SPLICING OF THE TETRAHYMENA PRE-RRNA Journal Article
DETERMINATION OF RECOGNITION NUCLEOTIDES FOR ESCHERICHIA-COLI PHENYLALANYL-TRANSFER RNA-SYNTHETASE Journal Article
DIFFERENT NUCLEOSOME SPACING IN TRANSCRIBED AND NON-TRANSCRIBED REGIONS OF THE RIBOSOMAL-RNA GENE IN TETRAHYMENA-THERMOPHILA Journal Article
DIFFERENTIAL EFFECTIVENESS OF YEAST CYTOCHROME-C-OXIDASE SUBUNIT-V GENES RESULTS FROM DIFFERENCES IN EXPRESSION NOT FUNCTION Journal Article
DIFFERENTIAL REGULATION OF THE 2 GENES ENCODING SACCHAROMYCES-CEREVISIAE CYTOCHROME-C OXIDASE SUBUNIT-V BY HEME AND THE HAP2 AND REO1 GENES Journal Article
DNA FUNCTIONAL-GROUPS REQUIRED FOR FORMATION OF OPEN COMPLEXES BETWEEN ESCHERICHIA-COLI RNA-POLYMERASE AND THE LAMBDA PR PROMOTER - IDENTIFICATION VIA BASE ANALOG SUBSTITUTIONS Journal Article
DNMT1-interacting RNAs block gene-specific DNA methylation Journal Article
Dampening DNA binding A common mechanism of transcriptional repression for both ncRNAs and protein domains Journal Article
Deconvolution of multiplexed transcriptional responses to wood smoke particles defines rapid aryl hydrocarbon receptor signaling dynamics Journal Article
Delivery of a matrix metalloproteinase-responsive hydrogel releasing TIMP-3 after myocardial infarction: effects on left ventricular remodeling Journal Article
Dependence of site-2 protease cleavage of ATF6 on prior site-1 protease digestion is determined by the size of the luminal domain of ATF6 Journal Article
Differential contribution of steady-state RNA and active transcription in chromatin organization Journal Article
Discordance between gene regulation in vitro and in vivo. Journal Article
Discovering Regulatory Overlapping RNA Transcripts Journal Article
Disruption of TGF-beta growth inhibition hy oncogenic ras is linked to p27(Kip1) mislocalization Journal Article
Disruption of promoter memory by synthesis of a long noncoding RNA Journal Article
Dissecting neural differentiation regulatory networks through epigenetic footprinting Journal Article
Distinct Cardiac Transcriptional Profiles Defining Pregnancy and Exercise Journal Article
Distinct conformational states of nuclear receptor-bound CRSP-Med complexes Journal Article
Diverse Phenotypes and Specific Transcription Patterns in Twenty Mouse Lines with Ablated LincRNAs Journal Article
Diversity in transcriptional start site selection and alternative splicing affects the 5 '-UTR of mouse striated muscle myosin transcripts Journal Article
Drosophila TAFII40 interacts with both a VP16 activation domain and the basal transcription factor TFIIB. Journal Article
Drosophila TFIIA-L is processed into two subunits that are associated with the TBP/TAF complex. Journal Article
Dynamic nucleosomes Journal Article
EBNA2 and activated notch induce expression of BATF Journal Article
Editorial overview: Nucleic acid movers and shakers Journal Article
Effects of oxygen concentration on the expression of cytochrome c and cytochrome c oxidase genes in yeast Journal Article
Effects of photochemically activated alkylating agents of the FR900482 family on chromatin Journal Article
Elevated expression of TANK-binding kinase 1 enhances tamoxifen resistance in breast cancer Journal Article
Engineering modular 'ON' RNA switches using biological components Journal Article
Estrogen-related receptor alpha 1 functionally binds as a monomer to extended half-site sequences including ones contained within estrogen-response elements Journal Article
Evaluating two steps in transcription using a fluorescence-based electrophoretic mobility shift assay Journal Article
Expanded encyclopaedias of DNA elements in the human and mouse genomes Journal Article
Expression of alpha(1b) adrenoceptor mRNA in corticotropin-releasing hormone-containing cells of the rat hypothalamus and its regulation by corticosterone Journal Article
Expression of myosin and actin in Escherichia coli. Journal Article
FASTKD1 and FASTKD4 have opposite effects on expression of specific mitochondrial RNAs, depending upon their endonuclease-like RAP domain Journal Article
FUNCTIONAL-ANALYSIS OF HUMAN CARDIAC GAP JUNCTION CHANNEL MUTANTS Journal Article
FUS binds the CTD of RNA polymerase II and regulates its phosphorylation at Ser2 Journal Article
Finding the start site: redefining the human initiator element Journal Article
From bacteria to humans, chromatin to elongation, and activation to repression: The expanding roles of noncoding RNAs in regulating transcription Journal Article
Function and expression of flavohemoglobin in Saccharomyces cerevisiae - Evidence for a role in the oxidative stress response Journal Article
GENE OF BACTERIOPHAGE-T4 WHOSE PRODUCT PREVENTS TRUE LATE TRANSCRIPTION ON CYTOSINE-CONTAINING T4 DNA Journal Article
GUANOSINE MODIFICATIONS IN RUNOFF TRANSCRIPTS OF SYNTHETIC TRANSFER RNA-PHE GENES MICROINJECTED INTO XENOPUS OOCYTES Conference Proceeding
Gene-specific requirement for P-TEFb activity and RNA polymerase II phosphorylation within the p53 transcriptional program Journal Article
Genes involved in pre-mRNA 3′-end formation and transcription termination revealed by a lin-15 operon Muv suppressor screen Journal Article
Genome-wide insights into eukaryotic transcriptional control. Journal Article
Genome-wide measurement of RNA secondary structure in yeast Journal Article
Genomic gems: SINE RNAs regulate mRNA production Journal Article
Global analysis of p53-regulated transcription identifies its direct targets and unexpected regulatory mechanisms Journal Article
Global gene expression analysis of ERK5 and ERK1/2 signaling reveals a role for HIF-1 in ERK5-mediated responses Journal Article
Global identification of human transcribed sequences with genome tiling arrays Journal Article
Group 1 Innate Lymphoid Cell Lineage Identity Is Determined by a cis-Regulatory Element Marked by a Long Non-coding RNA Journal Article
Heat shock in C. elegans induces downstream of gene transcription and accumulation of double-stranded RNA Journal Article
Heat shock protein accumulation is upregulated in a long-lived mutant of Caenorhabditis elegans Journal Article
Hierarchical Maintenance of MLL Myeloid Leukemia Stem Cells Employs a Transcriptional Program Shared with Embryonic Rather Than Adult Stem Cells Journal Article
Histone Chaperone Nap1 Is a Major Regulator of Histone H2A-H2B Dynamics at the Inducible GAL Locus Journal Article
Histone Core Phosphorylation Regulates DNA Accessibility Journal Article
Histone chaperone FACT action during transcription through chromatin by RNA polymerase II Journal Article
How do lncRNAs regulate transcription? Journal Article
Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock Journal Article
Human CRSP interacts with RNA polymerase IICTD and adopts a specific CTD-bound conformation Journal Article
Human Embryonic Stem Cell-Derived Keratinocytes Exhibit an Epidermal Transcription Program and Undergo Epithelial Morphogenesis in Engineered Tissue Constructs Journal Article
Human TFIIH Kinase CDK7 Regulates Transcription-Associated Chromatin Modifications Journal Article
IDENTIFICATION OF A CYSTEINE-RICH RECEPTOR FOR FIBROBLAST GROWTH-FACTORS Journal Article
IDENTIFICATION OF AN UPSTREAM ACTIVATION SEQUENCE AND OTHER CIS-ACTING ELEMENTS REQUIRED FOR TRANSCRIPTION OF COX6 FROM SACCHAROMYCES-CEREVISIAE Journal Article
IDENTIFICATION OF GENES THAT ARE DIFFERENTIALLY EXPRESSED DURING AGING IN CAENORHABDITIS-ELEGANS Journal Article
INHIBITION OF RNA CLEAVAGE BUT NOT POLYADENYLATION BY A POINT MUTATION IN MESSENGER RNA-3' CONSENSUS SEQUENCE AAUAAA Journal Article
INVITRO SPLICING OF THE RIBOSOMAL-RNA PRECURSOR IN NUCLEI OF TETRAHYMENA Journal Article
Identification of Mediator Kinase Substrates in Human Cells using Cortistatin A and Quantitative Phosphoproteomics Journal Article
Identification of NAD⁺ capped mRNAs in Saccharomyces cerevisiae Journal Article
Identification of novel functional elements in the human genome Journal Article
Identification of proteins binding coding and non-coding human RNAs using protein microarrays Journal Article
Identifying pattern-defined regulatory islands in mammalian genomes Journal Article
In organello mitochondrial protein and RNA synthesis systems from Saccharomyces cerevisiae. Journal Article
In vitro selection of phosphorothiolated aptamers Journal Article
In vitro studies of the early steps of RNA synthesis by human RNA polymerase II Journal Article
Insights into the Regulatory Landscape of the Lysine Riboswitch Journal Article
Insulin-like Signaling Determines Survival during Stress via Posttranscriptional Mechanisms in C. elegans Journal Article
Interactions of Escherichia coli RNA with bacteriophage MS2 coat protein: genomic SELEX Journal Article
Interactions of HMGB Proteins with the Genome and the Impact on Disease Journal Article
Juvenile hormone regulates de novo isoprenoid aggregation pheromone biosynthesis in pine bark beetles, Ips spp., through transcriptional control of HMG-CoA reductase Journal Article
KINETIC CHARACTERIZATION OF INTRAMOLECULAR AND INTERMOLECULAR HAMMERHEAD RNAS WITH STEM-II DELETIONS Journal Article
Kinetic and mechanistic analysis of the RNA polymerase II transcrption reaction at the human interleukin-2 promoter. Journal Article
LOCALIZATION OF TRANSCRIBED REGIONS ON EXTRACHROMOSOMAL RIBOSOMAL-RNA GENES OF TETRAHYMENA-THERMOPHILA BY R-LOOP MAPPING Journal Article
Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells Journal Article
Large-scale oligoribonucleotide production. Journal Article
Lessons from eRNAs: understanding transcriptional regulation through the lens of nascent RNAs Journal Article
Lessons on transcriptional control from the serum response network Journal Article
Limb deformity proteins: Role in mesodermal induction of the apical ectodermal ridge Journal Article
Localization and abundance analysis of human IncRNAs at single-cell and single-molecule resolution Journal Article
Localization of RNAPII and 3 ' end formation factor CstF subunits on C. elegans genes and operons Journal Article
Long Noncoding RNAs: Molecular Modalities to Organismal Functions Journal Article
MANY OF THE CONSERVED NUCLEOTIDES OF TRNA(PHE) ARE NOT ESSENTIAL FOR TERNARY COMPLEX-FORMATION AND PEPTIDE ELONGATION Journal Article
MOLECULAR ANALYSIS OF NO-ON-TRANSIENT-A, A GENE REQUIRED FOR NORMAL VISION IN DROSOPHILA Journal Article
MUTATION THAT CONFERS TEMPERATURE SENSITIVITY ON TRANSLATION OF RIIB IN BACTERIOPHAGE-T4 Journal Article
Mechanisms of regulatory diversity within the p53 transcriptional network Journal Article
Mechanistic Insights into Cofactor-Dependent Coupling of RNA Folding and mRNA Transcription/Translation by a Cobalamin Riboswitch Journal Article
Mediator and post-recruitment regulation of RNA polymerase II. Journal Article
Modeling of repeated-batch transcription for production of RNA Journal Article
Modifiers of notch transcriptional activity identified by genome-wide RNAi Journal Article
Molecular Mechanisms that Regulate the Coupled Period of the Mammalian Circadian Clock Journal Article
Molecular basis of transcription initiation in Archaea Journal Article
Molecular cloning and expression of the 32-kDa subunit of human TFIID reveals interactions with VP16 and TFIIB that mediate transcriptional activation. Journal Article
Monitoring transcriptional activity by RNA polymerase II in vitro using single molecule co-localization Journal Article
Mortalin controls centrosome duplication via modulating centrosomal localization of p53 Journal Article
Multiple yeast genes, including Paf1 complex genes, affect telomere length via telomerase RNA abundance Journal Article
Myh7b/miR-499 gene expression is transcriptionally regulated by MRFs and Eos Journal Article
Myocyte enhancer factor-2 and serum response factor binding elements regulate fast myosin heavy chain transcription in vivo Journal Article
NEW REACTIONS OF THE RIBOSOMAL-RNA PRECURSOR OF TETRAHYMENA AND THE MECHANISM OF SELF-SPLICING Journal Article
NFATc2 recruits cJun homodimers to an NFAT site to synergistically activate interleukin-2 transcription Journal Article
NON-ALU FAMILY INTERSPERSED REPEATS IN HUMAN DNA AND THEIR TRANSCRIPTIONAL ACTIVITY Journal Article
NUCLEAR FUNCTIONS REQUIRED FOR CYTOCHROME-C-OXIDASE BIOGENESIS IN SACCHAROMYCES-CEREVISIAE - MULTIPLE TRANS-ACTING NUCLEAR GENES EXERT SPECIFIC EFFECTS ON EXPRESSION OF EACH OF THE CYTOCHROME-C-OXIDASE SUBUNITS ENCODED ON MITOCHONDRIAL-DNA Journal Article
NUCLEOTIDES IN YEAST TRANSFER RNAPHE REQUIRED FOR THE SPECIFIC RECOGNITION BY ITS COGNATE SYNTHETASE Journal Article
Negative Supercoiling Creates Single-Stranded Patches of DNA That Are Substrates for AID-Mediated Mutagenesis Journal Article
Negative regulation of SCFSkp2 ubiquitin ligase by TGF-beta signaling Journal Article
Non-coding RNAs: key regulators of mammalian transcription Journal Article
Non-coding-RNA regulators of RNA polymerase II transcription Journal Article
Noncoding RNAs: Regulators of the Mammalian Transcription Machinery Journal Article
Novel Sfp1 Transcriptional Regulation of Saccharomyces cerevisiae Gene Expression Changes During Spaceflight Journal Article
Nuclear TRIM25 Specifically Targets Influenza Virus Ribonucleoproteins to Block the Onset of RNA Chain Elongation Journal Article
Nuclear myosin I is necessary for the formation of the first phosphodiester bond during transcription initiation by RNA polymerase II Journal Article
Nucleosome structure and function Journal Article
Nucleosomes containing the histone variant H2A.Bbd organize only 118 base pairs of DNA Journal Article
OLIGONUCLEOTIDE MUTAGENESIS OF THE LACPUV5 PROMOTER Journal Article
OLIGORIBONUCLEOTIDE SYNTHESIS USING T7 RNA-POLYMERASE AND SYNTHETIC DNA TEMPLATES Journal Article
ORGANIZATION AND EXPRESSION OF NON-ALU FAMILY INTERSPERSED REPETITIVE DNA-SEQUENCES IN THE MOUSE GENOME Journal Article
ORGANIZATION AND EXPRESSION OF THE COX6 GENETIC-LOCUS IN SACCHAROMYCES-CEREVISIAE - MULTIPLE MESSENGER-RNAS WITH DIFFERENT 3' TERMINI ARE TRANSCRIBED FROM COX6 AND REGULATED DIFFERENTIALLY Journal Article
OXYGEN REGULATED TRANSCRIPTION OF CYTOCHROME-C AND CYTOCHROME-C-OXIDASE GENES IN YEAST Journal Article
OXYTRICHA TELOMERE-BINDING PROTEIN - SEPARABLE DNA-BINDING AND DIMERIZATION DOMAINS OF THE ALPHA-SUBUNIT Journal Article
OmpR regulates the two-component system SsrA-SsrB in Salmonella pathogenicity island 2 Journal Article
Onset of C-elegans gastrulation is blocked by inhibition of embryonic transcription with an RNA polymerase antisense RNA Journal Article
Opinion - Regulatory diversity among metazoan co-activator complexes Journal Article
Optimization of repeated-batch transcription for RNA production Journal Article
PHAGE-T4 EXPRESSION VECTOR - PROTECTION FROM PROTEOLYSIS Journal Article
PHYLOGENETIC-RELATIONSHIPS AND ALTERED GENOME STRUCTURES AMONG TETRAHYMENA MITOCHONDRIAL DNAS Journal Article
POINT MUTATIONS OF THE ADENOVIRUS MAJOR LATE PROMOTER WITH DIFFERENT TRANSCRIPTIONAL EFFICIENCIES INVITRO Journal Article
POLYADENYLATION SITE SELECTION CANNOT OCCUR IN-VIVO AFTER EXCISION OF THE 3'-TERMINAL INTRON Journal Article
PRESENCE OF INTERLEUKIN-10 TRANSCRIPTS IN HUMAN PITUITARY AND HYPOTHALAMUS Journal Article
Partnering up for cardiac hypertrophy Journal Article
Pax7-FKHR Transcriptional Activity Is Enhanced by Transcriptionally Repressed MyoD Journal Article
Peroxisome proliferator-activated receptor γ inhibits transforming growth factor β-induced connective tissue growth factor expression in human aortic smooth muscle cells by interfering with Smad3 Journal Article
Phosphatase inhibition leads to histone deacetylases 1 and 2 phosphorylation and disruption of corepressor interactions Journal Article
Phosphorylation of I kappa B-alpha inhibits its cleavage by caspase CPP32 in vitro Journal Article
Photoaffinity cross-linking and RNA structure analysis Journal Article
Picking a nucleosome lock: Sequence- and structure-specific recognition of the nucleosome Journal Article
Pol II phosphorylation regulates a switch between transcriptional and splicing condensates Journal Article
Polyadenylation of telomerase RNA in budding yeast Journal Article
Polymerase Chaperoning and Multiple ATPase Sites Enable the E. coli DNA Polymerase III Holoenzyme to Rapidly Form Initiation Complexes Journal Article
Potential limitations of transcription terminators used as transgene insulators in adenoviral vectors. Journal Article
Preparation of Group I Introns for Biochemical Studies and Crystallization Assays by Native Affinity Purification Journal Article
Preparation of isotopically enriched RNAs for heteronuclear NMR Journal Article
Promoter escape limits the rate of RNA polymerase II transcription and is enhanced by TFIIE, TFIIH, and ATP on negatively supercoiled DNA Journal Article
Promoter scanning for transcription inhibition with DNA-binding polyamides Journal Article
Proteasomal dysfunction activates the transcription factor SKN-1 and produces a selective oxidative-stress response in Caenorhabditis elegans Journal Article
Protocol variations in run-on transcription dataset preparation produce detectable signatures in sequencing libraries Journal Article
REGULATION OF YEAST COX6 BY THE GENERAL TRANSCRIPTION FACTOR ABF1 AND SEPARATE HAP2-RESPONSIVE AND HEME-RESPONSIVE ELEMENTS Journal Article
RELEASE OF 2 SACCHAROMYCES-CEREVISIAE CYTOCHROME GENES, COX6 AND CYC1, FROM GLUCOSE REPRESSION REQUIRES THE SNF1-GENE AND SSN6-GENE PRODUCTS Journal Article
RIBOSOME-BINDING SITES AND RNA-PROCESSING SITES IN THE TRANSCRIPT OF THE ESCHERICHIA-COLI UNC OPERON Journal Article
RNA Pol II transcription model and interpretation of GRO-seq data Journal Article
RNA Polymerase II and TAFs Undergo a Slow Isomerization after the Polymerase Is Recruited to Promoter-Bound TFIID Journal Article
RNA Seeds Higher-Order Assembly of FUS Protein Journal Article
RNA TEMPLATE-DIRECTED RNA-SYNTHESIS BY T7 RNA-POLYMERASE Journal Article
RNA polymerase II acts as an RNA-dependent RNA polymerase to extend and destabilize a non-coding RNA Journal Article
RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes Journal Article
RNA-TRANSCRIPTION FROM IMMOBILIZED DNA TEMPLATES Journal Article
ROLE OF A BULGED-A RESIDUE IN A SPECIFIC RNA PROTEIN-INTERACTION Journal Article
Recapitulation of human betaB1-crystallin promoter activity in transgenic zebrafish. Journal Article
Reduction of the potent DNA polymerase III holoenzyme 3'----5' exonuclease activity by template-primer analogues. Journal Article
Regulation of Influenza RNA Polymerase Activity and the Switch between Replication and Transcription by the Concentrations of the vRNA 5 ' End, the Cap Source, and the Polymerase Journal Article
Regulatory sharing between estrogen receptor α bound enhancers Journal Article
Release of Human TFIIB from Actively Transcribing Complexes Is Triggered upon Synthesis of 7-and 9-nt RNAs Journal Article
Repression of p53-mediated transcription by MDM2: a dual mechanism Journal Article
Requirement of the orphan nuclear receptor SF-1 in terminal differentiation of ventromedial hypothalamic neurons Journal Article
Requirements for efficient ligand-gated co-transcriptional switching in designed variants of the B. subtilis pbuE adenine-responsive riboswitch in E. coli Journal Article
Right ventricular function and failure - Report of a National Heart, lung, and Blood Institute working group on cellular and molecular mechanisms of right heart failure Journal Article
SELECTION OF AN RNA MOLECULE THAT MIMICS A MAJOR AUTOANTIGENIC EPITOPE OF HUMAN INSULIN-RECEPTOR Journal Article
SELF-SPLICING AND ENZYMATIC CLEAVAGE OF RNA BY A GROUP-I INTERVENING SEQUENCE Journal Article
SELF-SPLICING OF THE GROUP-I INTRON FROM ANABAENA PRE-TRANSFER-RNA - REQUIREMENT FOR BASE-PAIRING OF THE EXONS IN THE ANTICODON STEM Journal Article
SELF-SPLICING RNA - AUTO-EXCISION AND AUTO-CYCLIZATION OF THE RIBOSOMAL-RNA INTERVENING SEQUENCE OF TETRAHYMENA Journal Article
SEQUENCE-SPECIFIC ENDORIBONUCLEASE ACTIVITY OF THE TETRAHYMENA RIBOZYME - ENHANCED CLEAVAGE OF CERTAIN OLIGONUCLEOTIDE SUBSTRATES THAT FORM MISMATCHED RIBOZYME SUBSTRATE COMPLEXES Journal Article
SPECIFIC INTERACTION BETWEEN THE SELF-SPLICING RNA OF TETRAHYMENA AND ITS GUANOSINE SUBSTRATE - IMPLICATIONS FOR BIOLOGICAL CATALYSIS BY RNA Journal Article
SPECIFICITY FOR 3',5'-LINKED SUBSTRATES IN RNA-CATALYZED RNA POLYMERIZATION Journal Article
SPRINT: a Cas13a-based platform for detection of small molecules Journal Article
STRUCTURAL-ANALYSIS OF 2 GENES ENCODING DIVERGENT FORMS OF YEAST CYTOCHROME-C-OXIDASE SUBUNIT-V Journal Article
STRUCTURE OF AN UNMODIFIED TRANSFER-RNA MOLECULE Journal Article
SUBSTRATE SEQUENCE EFFECTS ON HAMMERHEAD RNA CATALYTIC EFFICIENCY Journal Article
SUMO-1 modification of MEF2A regulates its transcriptional activity Journal Article
SYNTHESIS OF SMALL RNAS USING T7 RNA-POLYMERASE Journal Article
SYSTEMATIC EVOLUTION OF LIGANDS BY EXPONENTIAL ENRICHMENT - RNA LIGANDS TO BACTERIOPHAGE-T4 DNA-POLYMERASE Journal Article
Selective inhibition of CDK7 reveals high-confidence targets and new models for TFIIH function in transcription Journal Article
Self-splicing and enzymatic activity of an intervening sequence RNA from Tetrahymena Journal Article
Sequence analysis of the Escherichia coli dnaE gene. Journal Article
Single molecule studies of RNA polymerase II transcription in vitro. Journal Article
SnoN and Ski protooncoproteins ave rapidly degraded in response to transforming growth factor β signaling Journal Article
Spt4 selectively regulates the expression of C9orf72 sense and antisense mutant transcripts Journal Article
Stimulus-specific transcriptional regulation within the p53 network Journal Article
Structure and function of nucleosome assembly proteins Journal Article
Structure and mechanism of the RNA polymerase II transcription machinery Journal Article
Structure of histone-based chromatin in Archaea Journal Article
Structure, function, and activator-induced conformations of the CRSP coactivator Journal Article
Structures of regulatory elements in mRNAs Journal Article
Synergistic cooperation of TFE3 and Smad proteins in TGF-β-induced transcription of the plasminogen activator inhibitor-1 gene Journal Article
Synthesis and applications of RNAs with position-selective labelling and mosaic composition Journal Article
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis Journal Article
Systematic mutagenesis of TFIIH subunit p52/Tfb2 identifies residues required for XPB/Ssl2 subunit function and genetic interactions with TFB6 Journal Article
T7 RNA polymerase produces 5′ end heterogeneity during in vitro transcription from certain templates Journal Article
TATA-binding Protein and Transcription Factor IIB Induce Transcript Slipping during Early Transcription by RNA Polymerase II Journal Article
TBP-TAF complexes: selectivity factors for eukaryotic transcription. Journal Article
TFIID Enables RNA Polymerase II Promoter-Proximal Pausing Journal Article
TFIIF Facilitates Dissociation of RNA Polymerase II from Noncoding RNAs That Lack a Repression Domain Journal Article
THE BACTERIOPHAGE-T4 DEXA-GENE - SEQUENCE AND ANALYSIS OF A GENE CONDITIONALLY REQUIRED FOR DNA-REPLICATION Journal Article
THE INTERVENING SEQUENCE OF THE RIBOSOMAL-RNA PRECURSOR IS CONVERTED TO A CIRCULAR RNA IN ISOLATED-NUCLEI OF TETRAHYMENA Journal Article
THE ROLE OF THE TRP1 GENE IN YEAST TRYPTOPHAN BIOSYNTHESIS Journal Article
THIOPHOSPHATE INTERFERENCE EXPERIMENTS LOCATE PHOSPHATES IMPORTANT FOR THE HAMMERHEAD RNA SELF-CLEAVAGE REACTION Journal Article
TRANSCRIBED AND NON-TRANSCRIBED REGIONS OF TETRAHYMENA RIBOSOMAL GENE CHROMATIN HAVE DIFFERENT ACCESSIBILITIES TO MICROCOCCAL NUCLEASE Journal Article
TRANSCRIPTION OF YEAST COX6, THE GENE FOR CYTOCHROME-C OXIDASE SUBUNIT-VI, IS DEPENDENT ON HEME AND ON THE HAP2 GENE Journal Article
TRANSCRIPTIONAL ACTIVATION OF BACTERIOPHAGE-T4 MIDDLE PROMOTERS BY THE MOTA PROTEIN Journal Article
TRANSCRIPTIONAL MEASUREMENTS OF MOUSE REPEATED DNA-SEQUENCES Journal Article
TRANSLATIONAL REGULATION OF EXPRESSION OF THE BACTERIOPHAGE-T4 LYSOZYME GENE Journal Article
TRANSLATIONAL REPRESSION - BIOLOGICAL-ACTIVITY OF PLASMID-ENCODED BACTERIOPHAGE T4-REGA PROTEIN Journal Article
TRIM28 is a transcriptional activator of the mutant TERT in human bladder cancer Journal Article
TRIM28 regulates RNA polymerase II promoter-proximal pausing and pause release Journal Article
Tax recruitment of CBP/p300, via the KIX domain, reveals a potent requirement for acetyltransferase activity that is chromatin dependent and histone tail independent Journal Article
The Delta 40p53 isoform inhibits p53-dependent eRNA transcription and enables regulation by signal-specific transcription factors during p53 activation Journal Article
The GATA Factor elt-1 Regulates C. elegans Developmental Timing by Promoting Expression of the let-7 Family MicroRNAs Journal Article
The Herpes Simplex Virus 1 Protein ICP4 Acts as both an Activator and a Repressor of Host Genome Transcription during Infection Journal Article
The Histone Chaperone FACT: Structural Insights and Mechanisms for Nucleosome Reorganization Journal Article
The Histone Chaperone Nap1 Promotes Nucleosome Assembly by Eliminating Nonnucleosomal Histone DNA Interactions Journal Article
The Mediator complex and transcription regulation Journal Article
The Mediator complex as a master regulator of transcription by RNA polymerase II Journal Article
The Mediator kinase module: an interface between cell signaling and transcription Journal Article
The Non-Coding B2 RNA Binds to the DNA Cleft and Active-Site Region of RNA Polymerase II Journal Article
The OLD-1 positive regulator of longevity and stress resistance is under DAF-16 regulation in Caenorhabditis elegans Journal Article
The Reality of Pervasive Transcription Journal Article
The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock Journal Article
The Structure of a Tetrahydrofolate-Sensing Riboswitch Reveals Two Ligand Binding Sites in a Single Aptamer Journal Article
The Unfolded Protein Response in Secretory Cell Function Chapter
The adjacent dnaZ and dnaX genes of Escherichia coli are contained within one continuous open reading frame. Journal Article
The basic leucine zipper domain of c-Jun functions in transcriptional activation through interaction with the N terminus of human TATA-binding protein-associated factor-1 (human TAF_II250) Journal Article
The correlated evolution of Runx2 tandem repeats, transcriptional activity, and facial length in Carnivora Journal Article
The essential and multifunctional TFIIH complex Journal Article
The heterochromatic chromosome caps in great apes impact telomere metabolism Journal Article
The histone tails of the nucleosome Journal Article
The human Mediator complex: a versatile, genome-wide regulator of transcription Journal Article
The impact of post-transcriptional regulation in the p53 network Journal Article
The mouse mammary tumour virus promoter positioned on a tetramer of histones H3 and H4 binds nuclear factor 1 and OTF1 Journal Article
The regulation of mammalian mRNA transcription by lncRNAs: recent discoveries and current concepts Journal Article
The sequence at specific positions in the early transcribed region sets the rate of transcript synthesis by RNA polymerase II in vitro Journal Article
The transcriptional activity of human Chromosome 22 Journal Article
Tissue-specific transcriptional regulation has diverged significantly between human and mouse Journal Article
To repress or not to repress: This is the guardian's question Journal Article
Torque modulates nucleosome stability and facilitates H2A/H2B dimer loss Journal Article
Transcription factor IIE binds preferentially to RNA polymerase IIa and recruits TFIIH: a model for promoter clearance. Journal Article
Transcription factor enrichment analysis (TFEA) quantifies the activity of multiple transcription factors from a single experiment Journal Article
Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II. Journal Article
Transcriptional Responses to IFN-γ Require Mediator Kinase-Dependent Pause Release and Mechanistically Distinct CDK8 and CDK19 Functions Journal Article
Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells Journal Article
Transcriptional organization of the Escherichia coli dnaX gene. Journal Article
Transcriptional profile of aging in C-elegans Journal Article
Transcriptional regulation of IGF-I expression in skeletal muscle Journal Article
Transcriptional regulation: It takes a village Journal Article
Transcriptome analysis of Inbred Long Sleep and Inbred Short Sleep mice Journal Article
Transforming growth factor beta-induced phosphorylation of Smad3 is required for growth inhibition and transcriptional induction in epithelial cells Journal Article
Translocation after synthesis of a four-nucleotide RNA commits RNA polymerase II to promoter escape Journal Article
Two major tertiary folding transitions of the Tetrahymena catalytic RNA. Journal Article
UBIQUITOUS, INTERSPERSED REPEATED SEQUENCES IN MAMMALIAN GENOMES Journal Article
Unbiased Reconstruction of a Mammalian Transcriptional Network Mediating Pathogen Responses Journal Article
Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation Journal Article
Unraveling transcriptional control and cis-regulatory codes using the software suite GeneACT Journal Article
When Ras signaling reaches the mediator Journal Article
ZINC(II) AND THE SINGLE-STRANDED-DNA BINDING-PROTEIN OF BACTERIOPHAGE-T4 Journal Article
Zinc deficiency causes neural tube defects through attenuation of p53 ubiquitylation Journal Article
miR-30 Family microRNAs Regulate Myogenic Differentiation and Provide Negative Feedback on the microRNA Pathway Journal Article
p53 suppresses muscle differentiation at the myogenin step in response to genotoxic stress Journal Article
ΔNp63α utilizes multiple mechanisms to repress transcription in squamous cell carcinoma cells Journal Article
β (CC)-chemokines as modulators of sleep:: implications for HIV-induced alterations in arousal state Journal Article

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