Bacterial Proteins
PubMed MeSh Term
Overview
subject area of
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(p)ppGpp and c-di-AMP Homeostasis Is Controlled by CbpB in Listeria monocytogenes Journal Article
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Listeria monocytogenes triggers noncanonical autophagy upon phagocytosis, but avoids subsequent growth-restricting xenophagy Journal Article
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Salmonella acquires ferrous iron from haemophagocytic macrophages Journal Article
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Salmonella pathogenicity island 2-dependent macrophage death is mediated in part by the host cysteine protease caspase-1 Journal Article
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virK, somA and rcsC are important for systemic Salmonella enterica serovar Typhimurium infection and cationic peptide resistance Journal Article
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A DNA polymerase III holoenzyme-like subassembly from an extreme thermophilic eubacterium. Journal Article
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A Global Survey of Mycobacterial Diversity in Soil Journal Article
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A Multicolor Split-Fluorescent Protein Approach to Visualize Listeria Protein Secretion in Infection Journal Article
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A Protein Important for Antimicrobial Peptide Resistance, YdeI/OmdA, Is in the Periplasm and Interacts with OmpD/NmpC Journal Article
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A Radical Intermediate in the Conversion of Pentachlorophenol to Tetrachlorohydroquinone by Sphingobium chlorophenolicum Journal Article
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A eukaryotic-like ubiquitination system in bacterial antiviral defence. Journal Article
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A leucine-rich repeat variant with a novel repetitive protein structural motif Journal Article
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A novel assembly mechanism for the DNA polymerase III holoenzyme DnaX complex: association of deltadelta' with DnaX(4) forms DnaX(3)deltadelta'. Journal Article
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A three-domain structure for the delta subunit of the DNA polymerase III holoenzyme delta domain III binds delta' and assembles into the DnaX complex. Journal Article
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ACTIVATION OF THE PHOSPHOSIGNALING PROTEIN CHEY .1. ANALYSIS OF THE PHOSPHORYLATED CONFORMATION BY F-19 NMR AND PROTEIN ENGINEERING Journal Article
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ACTIVATION OF THE PHOSPHOSIGNALING PROTEIN CHEY .2. ANALYSIS OF ACTIVATED MUTANTS BY F-19 NMR AND PROTEIN ENGINEERING Journal Article
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ANALYSIS INVIVO OF TRANSLATIONAL MUTANTS OF THE RIIB CISTRON OF BACTERIOPHAGE-T4 Journal Article
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Acquisition of nonspecific Bartonella strains by the northern grasshopper mouse (Onychomys leucogaster) Journal Article
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Activation of the Listeria monocytogenes Virulence Program by a Reducing Environment Journal Article
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Adaptation mechanism of the aspartate receptor: Electrostatics of the adaptation subdomain play a key role in modulating kinase activity Journal Article
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An In Vivo Selection Identifies Listeria monocytogenes Genes Required to Sense the Intracellular Environment and Activate Virulence Factor Expression Journal Article
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An E1-E2 fusion protein primes antiviral immune signalling in bacteria Journal Article
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Architecture and signal transduction mechanism of the bacterial chemosensory array: Progress, controversies, and challenges Journal Article
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Assembly of DNA polymerase III holoenzyme: co-assembly of gamma and tau is inhibited by DnaX complex accessory proteins but stimulated by DNA polymerase III core. Journal Article
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Attractant regulation of the aspartate receptor-kinase complex: Limited cooperative interactions between receptors and effects of the receptor modification state Journal Article
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BLAST-1995 - INTERNATIONAL-CONFERENCE ON BACTERIAL LOCOMOTION AND SIGNAL-TRANSDUCTION Journal Article
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Bacterial NLR-related proteins protect against phage Journal Article
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Bacterial cGAS-like enzymes synthesize diverse nucleotide signals Journal Article
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Bacterial chemoreceptors: high-performance signaling in networked arrays Journal Article
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Bacterial efflux pump modulators prevent bacterial growth in macrophages and under broth conditions that mimic the host environment Journal Article
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Bacterial replicases and related polymerases Journal Article
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Bacteriophage SPP1 DNA replication strategies promote viral and disable host replication in vitro Journal Article
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CBASS Immunity Uses CARF-Related Effectors to Sense 3′-5′- and 2′-5′-Linked Cyclic Oligonucleotide Signals and Protect Bacteria from Phage Infection Journal Article
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COMPLEMENT C5A GENERATION BY STAPHYLOCOCCAL BIOFILMS Journal Article
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Carboxyl-terminal domain III of the delta' subunit of DNA polymerase III holoenzyme binds DnaX and supports cooperative DnaX complex assembly. Journal Article
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Chaperoning of a Replicative Polymerase onto a Newly Assembled DNA-Bound Sliding Clamp by the Clamp Loader Journal Article
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Characterization of the unique C terminus of the Escherichia coli tau DnaX protein. Monomeric C-tau binds alpha AND DnaB and can partially replace tau in reconstituted replication forks. Journal Article
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CheA kinase of bacterial chemotaxis: Chemical mapping of four essential docking sites Journal Article
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Chemotaxis receptor complexes: From signaling to assembly Journal Article
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Chromosomal replicases as asymmetric dimers: studies of subunit arrangement and functional consequences. Journal Article
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Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: delineation of a novel sub-family of bacterial DEAD proteins Journal Article
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Cloning and identification of the product of the dnaE gene of Escherichia coli. Journal Article
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Cocaine- and alcohol-mediated expression of inducible transcription factors is blocked by pentobarbital anesthesia Journal Article
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Comparative Genomics of Gardnerella vaginalis Strains Reveals Substantial Differences in Metabolic and Virulence Potential Journal Article
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Comparative Hydrogen-Deuterium Exchange for a Mesophilic vs Thermophilic Dihydrofolate Reductase at 25 degrees C: Identification of a Single Active Site Region with Enhanced Flexibility in the Mesophilic Protein Journal Article
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Computational modeling and evolutionary implications of biochemical reactions in bacterial microcompartments Journal Article
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Conserved glycine residues in the cytoplasmic domain of the aspartate receptor play essential roles in kinase coupling and on-off switching Journal Article
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Cooperativity between bacterial chemotaxis receptors Journal Article
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Coupling of a replicative polymerase and helicase: a tau-DnaB interaction mediates rapid replication fork movement. Journal Article
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Crystal Structure of BamB from Pseudomonas aeruginosa and Functional Evaluation of Its Conserved Structural Features Journal Article
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Crystal and solution structures of an HslUV protease-chaperone complex. Journal Article
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Crystal structure of a bacterial ribonuclease P RNA Journal Article
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Crystal structure of the ribonucleoprotein core of the signal recognition particle Journal Article
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Cyanobacterial carboxysome mutant analysis reveals the influence of enzyme compartmentalization on cellular metabolism and metabolic network rigidity Journal Article
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Cyclic di-AMP Is Critical for Listeria monocytogenes Growth, Cell Wall Homeostasis, and Establishment of Infection Journal Article
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DETECTION AND POSSIBLE ORIGINS OF AMINOMALONIC ACID IN PROTEIN HYDROLYSATES Journal Article
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DNA Replicases from a Bacterial Perspective Journal Article
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DNA polymerase III holoenzyme from Thermus thermophilus identification, expression, purification of components, and use to reconstitute a processive replicase. Journal Article
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DOMAINS OF INITIATOR TRANSFER-RNA AND INITIATION CODON CRUCIAL FOR INITIATOR TRANSFER-RNA SELECTION BY ESCHERICHIA-COLI IF3 Journal Article
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Defining a Key Receptor-CheA Kinase Contact and Elucidating Its Function in the Membrane-Bound Bacterial Chemosensory Array: A Disulfide Mapping and TAM-IDS Study Journal Article
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Detection of a conserved alpha-helix in the kinase-docking region of the aspartate receptor by cysteine and disulfide scanning Journal Article
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Differential Effects of a Mutation on the Normal and Promiscuous Activities of Orthologs: Implications for Natural and Directed Evolution Journal Article
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Disruption of narH, narJ, and moaE inhibits heterotrophic nitrification in Pseudomonas strain M19 Journal Article
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Distinct conformational states of nuclear receptor-bound CRSP-Med complexes Journal Article
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Effect of pH on the activity of ice-binding protein from Marinomonas primoryensis Journal Article
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Effects of polyvalent cations on the folding of an rRNA three-way junction and binding of ribosomal protein S15 Journal Article
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Elucidating sequence and solvent specific design targets to protect and stabilize enzymes for biocatalysis in ionic liquids Journal Article
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Engineered Socket Study of Signaling through a Four-Helix Bundle: Evidence for a Yin-Yang Mechanism in the Kinase Control Module of the Aspartate Receptor Journal Article
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Engineered carbohydrate-binding module (CBM) protein-suspended single-walled carbon nanotubes in water Journal Article
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Evidence for increased local flexibility in psychrophilic alcohol dehydrogenase relative to its thermophilic homologue Journal Article
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Evidence that pcpA encodes 2,6-dichlorohydroquinone dioxygenase, the ring cleavage enzyme required for pentachlorophenol degradation in Sphingomonas chlorophenolica strain ATCC 39723 Journal Article
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Evidence that the adaptation region of the aspartate receptor is a dynamic four-helix bundle: Cysteine and disulfide scanning studies Journal Article
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FAK deficiency in cells contributing to the basal lamina results in cortical abnormalities resembling congenital muscular dystrophies Journal Article
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Genetic Analysis of the Hox Hydrogenase in the Cyanobacterium Synechocystis sp PCC 6803 Reveals Subunit Roles in Association, Assembly, Maturation, and Function Journal Article
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Genome Annotation Provides Insight into Carbon Monoxide and Hydrogen Metabolism in Rubrivivax gelatinosus Journal Article
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Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S-enterica serovar Typhimurium DNA microarray Journal Article
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Glutathione activates virulence gene expression of an intracellular pathogen Journal Article
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Harnessing the mechanism of glutathione reductase for synthesis of active site bound metallic nanoparticles and electrical connection to electrodes Journal Article
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Heat shock protein accumulation is upregulated in a long-lived mutant of Caenorhabditis elegans Journal Article
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Host microarray analysis reveals a role for the Salmonella response regulator phoP in human macrophage cell death Journal Article
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INFORMATION-CONTENT OF BINDING-SITES ON NUCLEOTIDE-SEQUENCES Journal Article
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Identification of CED-3 substrates by a yeast-based screening method Journal Article
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Identification of a site critical for kinase regulation on the central processing unit (CPU) helix of the aspartate receptor Journal Article
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Identification of the acidic residues in the active site of DNA polymerase III. Journal Article
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Identification of the beta-binding domain of the alpha subunit of Escherichia coli polymerase III holoenzyme. Journal Article
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Identification, isolation, and characterization of the structural gene encoding the delta' subunit of Escherichia coli DNA polymerase III holoenzyme. Journal Article
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Identifying A beta-specific pathogenic mechanisms using a nematode model of Alzheimer's disease Journal Article
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Imaging type-III secretion reveals dynamics and spatial segregation of Salmonella effectors Journal Article
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In vitro evolution of the DNA binding sites of Escherichia coli methionine repressor, MetJ Journal Article
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In vivo induction of membrane damage by beta-amyloid peptide oligomers Journal Article
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Increasing and Decreasing the Ultrastability of Bacterial Chemotaxis Core Signaling Complexes by Modifying Protein-Protein Contacts Journal Article
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Is the sequence-specific binding of aminoacyl-tRNAs by EF-Tu universal among bacteria? Journal Article
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Isolated Bacterial Chemosensory Array Possesses Quasi- and Ultrastable Components: Functional Links between Array Stability, Cooperativity, and Order Journal Article
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Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23S ribosomal RNA Journal Article
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Kinetic tuning of the EF-Hand calcium binding motif: The gateway residue independently adjusts (I) barrier height and (II) equilibrium Journal Article
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Life cycle of a cyanobacterial carboxysome Journal Article
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Lipoic Acid Ligase-Promoted Bioorthogonal Protein Modification and Immobilization Chapter
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Live Cell Imaging Reveals the Dynamics of Telomerase Recruitment to Telomeres Journal Article
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Long-term live-cell imaging reveals new roles for Salmonella effector proteins SseG and SteA Journal Article
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Low-density microarrays for the detection of Borrelia burgdorferi s.s. (the Lyme disease spirochete) in nymphal Ixodes scapularis Journal Article
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MS2 Bacteriophage Reduction and Microbial Communities in Biosand Filters Journal Article
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Mass instability in isolated recombinant FixL heme domains of Bradyrhizobium japonicum Journal Article
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Members of a Novel Kinase Family (DUF1537) Can Recycle Toxic Intermediates into an Essential Metabolite. Journal Article
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Meta-Analyses of Dehalococcoides mccartyi Strain 195 Transcriptomic Profiles Identify a Respiration Rate-Related Gene Expression Transition Point and Interoperon Recruitment of a Key Oxidoreductase Subunit Journal Article
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Methanospirillum Respiratory mRNA Biomarkers Correlate with Hydrogenotrophic Methanogenesis Rate during Growth and Competition for Hydrogen in an Organochlorine-Respiring Mixed Culture Journal Article
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Methods to Illuminate the Role of Salmonella Effector Proteins during Infection: A Review Journal Article
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Microarray analysis and motif detection reveal new targets of the Salmonella enterica serovar typhimurium HilA regulatory protein, including hilA itself Journal Article
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Microfluidic System for In-Flow Reversible Photoswitching of Near Infrared Fluorescent Proteins Journal Article
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Molecular mechanism of transmembrane signaling by the aspartate receptor: A model Journal Article
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Molecular mechanisms underlying the close association between soil Burkholderia and fungi Journal Article
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Monoclonal antibodies specific for the tau subunit of the DNA polymerase III holoenzyme of Escherichia coli. Use to demonstrate that tau is the product of the dnaZX gene and that both it and gamma, the dnaZ gene product, are integral components of the same enzyme assembly. Journal Article
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NOVEL ION SPECIFICITY OF A CARBOXYLATE CLUSTER MG(II) BINDING-SITE - STRONG CHARGE SELECTIVITY AND WEAK SIZE SELECTIVITY Journal Article
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NUCLEOTIDE-SEQUENCE OF BACILLUS-SUBTILIS-DNAB - A GENE ESSENTIAL FOR DNA-REPLICATION INITIATION AND MEMBRANE ATTACHMENT Journal Article
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Neural networks for determining protein specificity and multiple alignment of binding sites. Journal Article
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New Insights into Bacterial Chemoreceptor Array Structure and Assembly from Electron Cryotomography Journal Article
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Nucleocytoplasmic Transport: A Role for Nonspecific Competition in Karyopherin-Nucleoporin Interactions Journal Article
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OS-FRET: A New One-Sample Method for Improved FRET Measurements Journal Article
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OmpR regulates the two-component system SsrA-SsrB in Salmonella pathogenicity island 2 Journal Article
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On-probe sample pretreatment for the detection of proteins above 15 KDa from whole cell bacteria by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry Journal Article
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Only One ATP-binding DnaX Subunit Is Required for Initiation Complex Formation by the Escherichia coli DNA Polymerase III Holoenzyme Journal Article
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Optimized Fluorescence Complementation Platform for Visualizing Salmonella Effector Proteins Reveals Distinctly Different Intracellular Niches in Different Cell Types Journal Article
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Phylogenetic Relationships and Functional Genes: Distribution of a Gene (mnxG) Encoding a Putative Manganese-Oxidizing Enzyme in Bacillus Species Journal Article
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Piston versus Scissors: Chemotaxis Receptors versus Sensor His-Kinase Receptors in Two-Component Signaling Pathways Journal Article
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Polymerase Chaperoning and Multiple ATPase Sites Enable the E. coli DNA Polymerase III Holoenzyme to Rapidly Form Initiation Complexes Journal Article
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Predicting the binding affinities of misacylated tRNAs for Thermus thermophilus EF-Tu.GTP. Journal Article
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Preparation of extracts from prokaryotes. Journal Article
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Proximity-based proteomics reveals the thylakoid lumen proteome in the cyanobacterium Synechococcus sp. PCC 7002 Journal Article
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Quantification of real-time Salmonella effector type III secretion kinetics reveals differential secretion rates for SopE2 and SptP Journal Article
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Quantitative Multicolor Subdiffraction Imaging of Bacterial Protein Ultrastructures in Three Dimensions Journal Article
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Quantitative analysis of aspartate receptor signaling complex reveals that the homogeneous two-state model is inadequate: Development of a heterogeneous two-state model Journal Article
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RECOGNITION OF THE MESSENGER-RNA SELENOCYSTEINE INSERTION-SEQUENCE BY THE SPECIALIZED TRANSLATIONAL ELONGATION-FACTOR SELB Journal Article
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RII CISTRONS OF BACTERIOPHAGE-T4 - DNA-SEQUENCE AROUND THE INTERCISTRONIC DIVIDE AND POSITIONS OF GENETIC LANDMARKS Journal Article
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RNA finds a simpler way Journal Article
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RNase P: interface of the RNA and protein worlds Journal Article
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Rapid bursts and slow declines: on the possible evolutionary trajectories of enzymes Journal Article
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Reconstitution of the B-subtilis Replisome with 13 Proteins Including Two Distinct Replicases Journal Article
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Relating Chloroethene Respiration Rates in Dehalococcoides to Protein and mRNA Biomarkers Journal Article
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Relating mRNA and protein biomarker levels in a Dehalococcoides and Methanospirillum-containing community Journal Article
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Repositioning Antimicrobial Agent Pentamidine as a Disruptor of the Lateral Interactions of Transmembrane Domain 5 of EBV Latent Membrane Protein 1 Journal Article
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Role of the core DNA polymerase III subunits at the replication fork. Alpha is the only subunit required for processive replication. Journal Article
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SEQUENCE OF THE COMPLETE P-PROTEIN GENE AND PART OF THE M PROTEIN GENE FROM THE HISTIDINE TRANSPORT OPERON OF ESCHERICHIA-COLI COMPARED TO THAT OF SALMONELLA-TYPHIMURIUM Journal Article
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SPRINT: a Cas13a-based platform for detection of small molecules Journal Article
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Salmonella enterica Replication in Hemophagocytic Macrophages Requires Two Type Three Secretion Systems Journal Article
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Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF). Journal Article
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Sequence analysis of the Escherichia coli dnaE gene. Journal Article
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Sequestration of a highly reactive intermediate in an evolving pathway for degradation of pentachlorophenol Journal Article
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Side chains at the membrane-water interface modulate the signaling state of a transmembrane receptor Journal Article
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Signaling and sensory adaptation in Escherichia coli chemoreceptors: 2015 update Journal Article
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Signaling domain of the aspartate receptor is a helical hairpin with a localized kinase docking surface: Cysteine and disulfide scanning studies Journal Article
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Single- and dual-parameter FRET kinase probes based on pleckstrin Journal Article
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Structural Basis for Substrate Specificity in ArnB. A Key Enzyme in the Polymyxin Resistance Pathway of Gram-Negative Bacteria Journal Article
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Structural and functional innovations in the real-time evolution of new (βα)8 barrel enzymes Journal Article
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Structural insights into the signal recognition particle Journal Article
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Structure and Function of ArnD. A Deformylase Essential for Lipid A Modification with 4-Amino-4-deoxy-l-arabinose and Polymyxin Resistance Journal Article
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Structure and Mechanism of a Cyclic Trinucleotide-Activated Bacterial Endonuclease Mediating Bacteriophage Immunity Journal Article
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Structure and kinetics of indole-3-glycerol phosphate synthase from Pseudomonas aeruginosa: Decarboxylation is not essential for indole formation Journal Article
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Structure of Mediator of RhoA-Dependent Invasion (MRDI) Explains Its Dual Function as a Metabolic Enzyme and a Mediator of Cell Invasion Journal Article
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Structure of a class II TrmH tRNA-modifying enzyme from Aquifex aeolicus Journal Article
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Structure of a conserved receptor domain that regulates kinase activity: the cytoplasmic domain of bacterial taxis receptors Journal Article
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Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine Journal Article
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Structure of the conserved HAMP domain in an intact, membrane-bound chemoreceptor: A disulfide mapping study Journal Article
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Structure of the universal stress protein of Haemophilus influenzae. Journal Article
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Structure, Function, and On-Off Switching of a Core Unit Contact between CheA Kinase and CheW Adaptor Protein in the Bacterial Chemosensory Array: A Disulfide Mapping and Mutagenesis Study Journal Article
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Structure-guided Mutational Analysis of Gene Regulation by the Bacillus subtilis pbuE Adenine-responsive Riboswitch in a Cellular Context Journal Article
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Studying polyglutamine aggregation in Caenorhabditis elegans using an analytical ultracentrifuge equipped with fluorescence detection Journal Article
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Synonymous mutations make dramatic contributions to fitness when growth is limited by a weak-link enzyme Journal Article
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THE BACTERIOPHAGE-T4 REGB RIBONUCLEASE - STIMULATION OF THE PURIFIED ENZYME BY RIBOSOMAL-PROTEIN-S1 Journal Article
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Tau binds and organizes Escherichia coli replication proteins through distinct domains. Domain III, shared by gamma and tau, binds delta delta ' and chi psi. Journal Article
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Temperature dependence of protein motions in a thermophilic dihydrofolate reductase and its relationship to catalytic efficiency Journal Article
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The 3.2 Å Resolution Structure of a Receptor:CheA:CheW Signaling Complex Defines Overlapping Binding Sites and Key Residue Interactions within Bacterial Chemosensory Arrays Journal Article
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The 51-63 base pair of tRNA confers specificity for binding by EF-Tu. Journal Article
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The Core Signaling Proteins of Bacterial Chemotaxis Assemble To Form an Ultrastable Complex Journal Article
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The DnaX-binding subunits delta' and psi are bound to gamma and not tau in the DNA polymerase III holoenzyme. Journal Article
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The Growing and Glowing Toolbox of Fluorescent and Photoactive Proteins Journal Article
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The PAMP c-di-AMP Is Essential for Listeria Growth in Macrophages and Rich but Not Minimal Media due to a Toxic Increase in (p) ppGpp Journal Article
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The Piston Rises Again Journal Article
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The Rcs phosphorelay system is specific to enteric pathogens/commensals and activates ydeI, a gene important for persistent Salmonella infection of mice Journal Article
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The Structure of a Tetrahydrofolate-Sensing Riboswitch Reveals Two Ligand Binding Sites in a Single Aptamer Journal Article
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The affinity of elongation factor Tu for an aminoacyl-tRNA is modulated by the esterified amino acid. Journal Article
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The carboxy-terminal domain of the DExD/H protein YxiN is sufficient to confer specificity for 23 S rRNA Journal Article
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The cytoplasmic amino-terminus of the Latent Membrane Protein-1 of Epstein-Barr Virus: relationship between transmembrane orientation and effector functions of the carboxy-terminus and transmembrane domain Journal Article
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The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold. Journal Article
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The genetic core of the universal ancestor Journal Article
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The two-component signaling pathway of bacterial chemotaxis: A molecular view of signal transduction by receptors, kinases, and adaptation enzymes Journal Article
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Thermal Domain Motions of CheA Kinase in Solution: Disulfide Trapping Reveals the Motional Constraints Leading to Trans-autophosphorylation Journal Article
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Transmembrane signaling in bacterial chemoreceptors Journal Article
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Type III secretion system effector proteins are mechanically labile Journal Article
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Understanding Design Rules for Optimizing the Interface between Immobilized Enzymes and Random Copolymer Brushes Journal Article
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Understanding the sequence specificity of tRNA binding to elongation factor Tu using tRNA mutagenesis. Journal Article
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Use of F-19 NMR to probe protein structure and conformational changes Journal Article
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YxiN is a modular protein combining a DEx(D/H) core and a specific RNA-binding domain. Journal Article
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c-di-AMP modulates Listeria monocytogenes central metabolism to regulate growth, antibiotic resistance and osmoregulation Journal Article
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tau binds and organizes Escherichia coli replication proteins through distinct domains. Domain IV, located within the unique C terminus of tau, binds the replication fork, helicase, DnaB. Journal Article
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tau binds and organizes Escherichia coli replication proteins through distinct domains: domain III, shared by gamma and tau, oligomerizes DnaX. Journal Article
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tau binds and organizes Escherichia coli replication through distinct domains. Partial proteolysis of terminally tagged tau to determine candidate domains and to assign domain V as the alpha binding domain. Journal Article
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