Mathematical Concepts - Algorithms
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Overview
subject area of
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De novo designed peptide-based amyloid fibrils Journal Article
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A Comparison between Mouse, In Silico, and Robot Odor Plume Navigation Reveals Advantages of Mouse Odor Tracking Journal Article
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A Comparison of Weighted Stochastic Simulation Methods for the Analysis of Genetic Circuits Journal Article
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A Methodology to Annotate Systems Biology Markup Language Models with the Synthetic Biology Open Language Journal Article
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A Modeling Framework for Generation of Positional and Temporal Simulations of Transcriptional Regulation Journal Article
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A Multiresolution Approach to Shear Wave Image Reconstruction Journal Article
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A New Dual Current-Mode Controller Improves Power Regulation in Electrosurgical Generators Journal Article
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A Simple Method for Estimating Informative Node Age Priors for the Fossil Calibration of Molecular Divergence Time Analyses Journal Article
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A Web Interface for Codon Compression Journal Article
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A family of locally constrained CCA models for detecting activation patterns in fMRI Journal Article
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A fast reconstruction algorithm for electron microscope tomography Journal Article
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A highly parallel simulation of patient-specific hepatic flows Journal Article
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A new open-source tool for measuring 3D osteocyte lacunar geometries from confocal laser scanning microscopy reveals age-related changes to lacunar size and shape in cortical mouse bone Journal Article
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A parallel non-nested two-level domain decomposition method for simulating blood flows in cerebral artery of stroke patient Journal Article
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A pulse sequence optimization method for assessment of nucleus size in q-space analysis of idealized cells Journal Article
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ANALYSIS OF SIDE-CHAIN CONFORMATIONAL DISTRIBUTIONS IN NEUTROPHIL PEPTIDE-5 NMR STRUCTURES Journal Article
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Accuracy of Optimized Branched Algorithms to Assess Activity-Specific Physical Activity Energy Expenditure Journal Article
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Accuracy of the Stages of Change Algorithm: Sexual Risk Reported in the Maintenance Stage of Change Journal Article
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Accurate Telemonitoring of Parkinsons Disease Progression by Noninvasive Speech Tests Journal Article
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Acoustic Reciprocity of Spatial Coherence in Ultrasound Imaging Journal Article
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Activating and inhibiting connections in biological network dynamics Journal Article
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Advantages in using multi-frequency driving ultrasound for optimizing echo particle image velocimetry techniques Journal Article
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Albinterferon alpha(2b) Adsorption to Silicone Oil-Water Interfaces: Effects on Protein Conformation, Aggregation, and Subvisible Particle Formation Journal Article
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An Annotation Agnostic Algorithm for Detecting Nascent RNA Transcripts in GRO-Seq Journal Article
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An efficient parallel simulation of unsteady blood flows in patient-specific pulmonary artery Journal Article
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An evolutionary model of osteoarthritis including articular cartilage damage, and bone remodeling in a computational study Journal Article
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Analysis of event-related fMRI data using best clustering bases Journal Article
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Analysis of event-related fMRI data using diffusion maps Journal Article
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Assortative mating biases marker-based heritability estimators Journal Article
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Atomic force microscopy with sub-picoNewton force stability for biological applications Journal Article
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Automated discovery of functional generality of human gene expression programs. Journal Article
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Biodegradation of aromatic compounds and TCE by a filamentous bacteria-dominated consortium Journal Article
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Blocked Elements in 1-D and 2-D Arrays-Part II: Compensation Methods as Applied to Large Coherent Apertures Journal Article
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CTF determination and correction for low dose tomographic tilt series Journal Article
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Challenges in solving structures from radiation-damaged tomograms of protein nanocrystals assessed by simulation Journal Article
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Chaotic advection and the emergence of tori in the Kuppers-Lortz state Journal Article
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Characterization of fluid distribution through a porous substrate under dynamic g conditions. Journal Article
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Characterization of frequency noise on a broadband infrared frequency comb using optical heterodyne techniques Journal Article
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Classification of fMRI time series in a low-dimensional subspace with a spatial prior Journal Article
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CodaChrome: a tool for the visualization of proteome conservation across all fully sequenced bacterial genomes Journal Article
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Codon Compression Algorithms for Saturation Mutagenesis Journal Article
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Color image projection through a strongly scattering wall Journal Article
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Comparing the information conveyed by envelope modulation for speech intelligibility, speech quality, and music quality Journal Article
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Comparison of methods for estimating the nucleotide substitution matrix Journal Article
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Computer systems are dynamical systems Journal Article
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Computer vision supported pedestrian tracking: A demonstration on trail bridges in rural Rwanda Journal Article
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ConFind: a robust tool for conserved sequence identification Journal Article
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Contributions of episodic retrieval and mentalizing to autobiographical thought: Evidence from functional neuroimaging, resting-state connectivity, and fMRI meta-analyses Journal Article
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Control of force during rapid visuomotor force-matching tasks can be described by discrete time PID control algorithms Journal Article
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Correction of sampling errors due to laser tuning rate fluctuations in swept-wavelength interferometry Journal Article
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Critical analysis of commonly used fluorescence metrics to characterize dissolved organic matter Journal Article
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Cross-species cluster co-conservation: a new method for generating protein interaction networks Journal Article
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DETERMINING LOCAL CONFORMATIONAL VARIATIONS IN DNA - NUCLEAR-MAGNETIC-RESONANCE STRUCTURES OF THE DNA DUPLEXES D(CGCCTAATCG) AND D(CGTCACGCGC) GENERATED USING BACK-CALCULATION OF THE NUCLEAR OVERHAUSER EFFECT SPECTRA, A DISTANCE GEOMETRY ALGORITHM AND CONSTRAINED MOLECULAR-DYNAMICS Journal Article
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Denoising large-scale biological data using network filters Journal Article
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Depth estimation and image recovery using broadband, incoherent illumination with engineered point spread functions Journal Article
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Depth from diffracted rotation Journal Article
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Derivations of the band-importance function: A cross-procedure comparison (L) Journal Article
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Design and analysis of a robust genetic Muller C-element Journal Article
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Designing a Collaborative Visual Analytics Tool for Social and Technological Change Prediction Journal Article
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Detecting autozygosity through runs of homozygosity: A comparison of three autozygosity detection algorithms Journal Article
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Detecting putative orthologs Journal Article
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Detection and Segmentation of Concealed Objects in Terahertz Images Journal Article
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Direct Estimation of Parameters in ODE Models Using WENDy: Weak-Form Estimation of Nonlinear Dynamics Journal Article
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Directed Acyclic Graph-Based Technology Mapping of Genetic Circuit Models Journal Article
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Discovering Regulatory Overlapping RNA Transcripts Journal Article
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Dosage and Temporal Thresholds in microRNA Proteomics Journal Article
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Double-helix enhanced axial localization in STED nanoscopy Journal Article
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Dynamic Management of Codon Compression for Saturation Mutagenesis Journal Article
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Dynamics in hybrid complex systems of switches and oscillators Journal Article
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E. coli "super-contaminates" narrow ducts fostered by broad run-time distribution Journal Article
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Echo PIV for flow field measurements in vivo Journal Article
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Economics of disaster risk, social vulnerability, and mental health resilience. Journal Article
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Effects of Noise, Nonlinear Processing, and Linear Filtering on Perceived Speech Quality Journal Article
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Effects of chronic run training on Na+-dependent Ca2+ efflux from rat left ventricular myocytes Journal Article
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Effects of sea ice cover on satellite-detected primary production in the Arctic Ocean Journal Article
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Efficient analysis methods in synthetic biology. Journal Article
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Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints Journal Article
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Efficiently inferring community structure in bipartite networks Journal Article
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Empirical Bayes hierarchical models for regularizing maximum likelihood estimation in the matrix Gaussian Procrustes problem Journal Article
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Epidemics of Community-Associated Methicillin-Resistant Staphylococcus aureus in the United States: A Meta-Analysis Journal Article
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Epidemiological modelling of the 2005 French riots: a spreading wave and the role of contagion Journal Article
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Equivalence of time and aperture domain additive noise in ultrasound coherence Journal Article
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Estimating kinetic parameters from HIV primary infection data through the eyes of three different mathematical models Journal Article
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Evaluation of cerebrovascular hemodynamics in vascular dementia patients with a new individual computational fluid dynamics algorithm Journal Article
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Exact-mass library for pesticides using a molecular-feature database Journal Article
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Exploring community structure in biological networks with random graphs Journal Article
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Extending Retrospective Encoding for Robust Recovery of the Multistatic Data Set Journal Article
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Extrapolation of Urn Models via Poissonization: Accurate Measurements of the Microbial Unknown Journal Article
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FEATHER: Automated Analysis of Force Spectroscopy Unbinding and Unfolding Data via a Bayesian Algorithm Journal Article
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Fast-Find: A novel computational approach to analyzing combinatorial motifs Journal Article
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Fetal magnetocardiography measurements with an array of microfabricated optically pumped magnetometers Journal Article
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First-order system least-squares (FOSLS) for modeling blood flow Journal Article
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Generation of bright isolated attosecond soft X-ray pulses driven by multicycle midinfrared lasers Journal Article
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Genetic algorithm optimization for focusing through turbid media in noisy environments Journal Article
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Genetic triple dissociation reveals multiple roles for dopamine in reinforcement learning Journal Article
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Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering Journal Article
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Genomic Design of Strong Direct-Gap Optical Transition in Si/Ge Core/Multishell Nanowires Journal Article
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Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture Journal Article
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Hierarchical Partial Matching and Segmentation of Interacting Cells Journal Article
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Hierarchical structure and the prediction of missing links in networks Journal Article
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High contrast three-dimensional photoacoustic imaging through scattering media by localized optical fluence enhancement Journal Article
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High numerical aperture reflection mode coherent diffraction microscopy using off-axis apertured illumination Journal Article
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High numerical aperture tabletop soft x-ray diffraction microscopy with 70-nm resolution Journal Article
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High throughput single molecule tracking for analysis of rare populations and events Journal Article
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High-Throughput Examination of Fluorescence Resonance Energy Transfer-Detected Metal-Ion Response in Mammalian Cells Journal Article
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High-efficiency rotating point spread functions Journal Article
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High-resolution pyrimidine- and ribose-specific 4D HCCH-COSY spectra of RNA using the filter diagonalization method Journal Article
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Histogram Matching for Visual Ultrasound Image Comparison Journal Article
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Identifying pattern-defined regulatory islands in mammalian genomes Journal Article
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Imaging by Integrating Stitched Spectrograms Journal Article
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Impact of human D398N single nucleotide polymorphism on intracellular calcium response mediated by alpha 3 beta 4 alpha 5 nicotinic acetylcholine receptors Journal Article
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Improved calibration method for depolarization lidar measurement Journal Article
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In vivo measurement of hindlimb neuromuscular function in mice Journal Article
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Incoherent Clutter Suppression Using Lag-One Coherence Journal Article
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Increased sensitivity in neuroimaging analyses using robust regression Journal Article
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Influence of amplitude cancellation on the accuracy of determining the onset of muscle activity from the surface electromyogram Journal Article
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Influence of fatigue on the simulated relation between the amplitude of the surface electromyogram and muscle force Journal Article
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Information Space Receding Horizon Control Journal Article
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Information-theoretic analysis of realistic odor plumes: What cues are useful for determining location? Journal Article
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Instant spectral assignment for advanced decision tree-driven mass spectrometry Journal Article
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Intensive treatment of dysarthria secondary to stroke Journal Article
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Interpretable metric learning in comparative metagenomics: The adaptive Haar-like distance Journal Article
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IsoformResolver: A Peptide-Centric Algorithm for Protein Inference Journal Article
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LIMITED SAMPLING OF CONFORMATIONAL SPACE BY THE DISTANCE GEOMETRY ALGORITHM - IMPLICATIONS FOR STRUCTURES GENERATED FROM NMR DATA Journal Article
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Large-scale simulations of concentrated emulsion flows Journal Article
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Learning Genetic Regulatory Network Connectivity from Time Series Data Journal Article
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Leg exoskeleton reduces the metabolic cost of human hopping Journal Article
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Limits of 3D dipole localization and orientation estimation for single-molecule imaging: towards Green's tensor engineering Journal Article
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Link prediction accuracy on real-world networks under non-uniform missing-edge patterns. Journal Article
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Longitudinal Infant Speech Perception in Young Cochlear Implant Users Journal Article
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Low-dimensional embedding of fMRI datasets Journal Article
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Machine learning and statistical analyses for extracting and characterizing "fingerprints" of antibody aggregation at container interfaces from flow microscopy images Journal Article
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Machine learning models accurately predict ozone exposure during wildfire events Journal Article
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Measuring Changes in Aerodynamic/Rolling Resistances by Cycle-Mounted Power Meters Journal Article
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Measuring the mass of an electron by LC/TOF-MS: A study of "twin ions" Journal Article
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Metabolic cost of generating muscular force in human walking: insights from load-carrying and speed experiments Journal Article
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MetricsVis: A Visual Analytics System for Evaluating Employee Performance in Public Safety Agencies Journal Article
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Microtubule Depolymerization by the Kinesin-8 Motor Kip3p: A Mathematical Model Journal Article
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Modeling 3-D compliant blood flow with fosls Journal Article
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Modeling blood flow around a thrombus using a hybrid particle-continuum approach Journal Article
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Modeling deuterium exchange behavior of ERK2 using pepsin mapping to probe secondary structure Journal Article
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Modeling keratinocyte wound healing dynamics: Cell-cell adhesion promotes sustained collective migration Journal Article
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Money Buys Happiness When Spending Fits Our Personality Journal Article
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MotifCluster: an interactive online tool for clustering and visualizing sequences using shared motifs Journal Article
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Motion Tracker: Camera-Based Monitoring of Bodily Movements Using Motion Silhouettes Journal Article
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Motor unit recruitment and bursts of activity in the surface electromyogram during a sustained contraction Journal Article
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Multi-Hour Blood Glucose Prediction in Type 1 Diabetes: A Patient-Specific Approach Using Shallow Neural Network Models Journal Article
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Multilevel Models for the Distribution of Hosts and Symbionts Journal Article
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Multireference configuration interaction and perturbation theory without reduced density matrices Journal Article
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Multivariate group-level analysis for task fMRI data with canonical correlation analysis Journal Article
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Mutations in FGF17, IL17RD, DUSP6, SPRY4, and FLRT3 Are Identified in Individuals with Congenital Hypogonadotropic Hypogonadism Journal Article
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NMR Chemical Shift Mapping of SH2 Peptide Interactions Journal Article
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Near-field measurement of infrared coplanar strip transmission line attenuation and propagation constants Journal Article
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Neural mechanisms of cognitive control: an integrative model of stroop task performance and fMRI data Journal Article
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Neuromuscular adjustments that constrain submaximal EMG amplitude at task failure of sustained isometric contractions Journal Article
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Nine (not so simple) steps: a practical guide to using machine learning in microbial ecology Journal Article
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Noise removal in extended depth of field microscope images through nonlinear signal processing Journal Article
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Nonlinear speech analysis algorithms mapped to a standard metric achieve clinically useful quantification of average Parkinson's disease symptom severity Journal Article
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Nucleocytoplasmic Transport: A Role for Nonspecific Competition in Karyopherin-Nucleoporin Interactions Journal Article
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Objective Automatic Assessment of Rehabilitative Speech Treatment in Parkinson's Disease Journal Article
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Olfactory Navigation and the Receptor Nonlinearity Journal Article
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Optimal design of active spreading systems to remediate sorbing groundwater contaminants in situ Journal Article
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Optimization of input patterns and neuronal properties to evoke motor neuron synchronization Journal Article
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Optimized linear prediction for radial sampled multidimensional NMR experiments Journal Article
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Optimizing the performance of local canonical correlation analysis in fMRI using spatial constraints Journal Article
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ParSe 2.0: A web tool to identify drivers of protein phase separation at the proteome level Journal Article
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Phase matching of high harmonic generation in the soft and hard X-ray regions of the spectrum Journal Article
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Photodegradation of Azobenzene-Based Self-assembled Monolayers Characterized by In-Plane Birefringence Journal Article
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Photopolymerization of multilaminated poly(HEMA) hydrogels for controlled release Journal Article
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Physiological validation of the decomposition of surface EMG signals Journal Article
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Plant Dynamics, Birth-Jump Processes, and Sharp Traveling Waves Journal Article
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Prediction of multiple tandem OB-fold domains in telomere end-binding proteins Pot1 and Cdc13 Journal Article
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Primary cyclization in the polymerization of bis-GMA and TEGDMA: a modeling approach to understanding the cure of dental resins Journal Article
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Production-passage-time approximation: A new approximation method to accelerate the simulation process of enzymatic reactions Conference Proceeding
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Propagation of fronts in the Fisher-Kolmogorov equation with spatially varying diffusion Journal Article
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Prosthetic shape, but not stiffness or height, affects the maximum speed of sprinters with bilateral transtibial amputations (Retracted Article) Journal Article
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Quantifying climate sensitivity and climate-driven change in North American amphibian communities Journal Article
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Quantitative Tracking of Combinatorially Engineered Populations with Multiplexed Binary Assemblies Journal Article
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Quantitative structured-illumination phase microscopy Journal Article
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Quasi-phase-matching and dispersion characterization of harmonic generation in the perturbative regime using counterpropagating beams Journal Article
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RELAXATION OF A SINGLE DNA MOLECULE OBSERVED BY OPTICAL MICROSCOPY Journal Article
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Recovery of the Complete Data Set From Focused Transmit Beams Journal Article
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Retrieval of effective complex refractive index from intensive measurements of characteristics of ambient aerosols in the boundary layer Journal Article
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Robust fundamental frequency estimation in sustained vowels: Detailed algorithmic comparisons and information fusion with adaptive Kalman filtering Journal Article
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Robust priors for regularized regression Journal Article
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SITEHOUND-web: a server for ligand binding site identification in protein structures Journal Article
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SPHERICAL-WAVE EXPANSIONS OF PISTON-RADIATOR FIELDS Journal Article
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STRANGE BETA: An assistance system for indoor rock climbing route setting Journal Article
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Searching for non-target chlorinated pesticides in food by liquid chromatography/time-of-flight mass spectrometry Journal Article
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Searching thousands of genomes to classify somatic and novel structural variants using STIX Journal Article
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Semantic algorithms can detect how media language shapes survey responses in organizational behaviour Journal Article
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Sequence-encoded colloidal origami and microbot assemblies from patchy magnetic cubes Journal Article
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Simulation of unsteady blood flows in a patient-specific compliant pulmonary artery with a highly parallel monolithically coupled fluid-structure interaction algorithm Journal Article
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Simultaneous border-collision and period-doubling bifurcations Journal Article
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Solution structure of tRNA(Val) from refinement of homology model against residual dipolar coupling and SAXS data Journal Article
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Spatial modeling of personalized exposure dynamics: the case of pesticide use in small-scale agricultural production landscapes of the developing world Journal Article
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Spatiotemporal Prediction of Fine Particulate Matter During the 2008 Northern California Wildfires Using Machine Learning Journal Article
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Spatiotemporal intracellular calcium dynamics during cardiac alternans Journal Article
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Spectrum-to-Spectrum Searching Using a Proteome-wide Spectral Library Journal Article
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Stability and distortions of liquid crystal order in a cell with a heterogeneous substrate Journal Article
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Stabilization of an optical microscope to 0.1 nm in three dimensions Journal Article
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Sticky surface: sphere-sphere adhesion dynamics Journal Article
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Stochastic Lanczos estimation of genomic variance components for linear mixed-effects models Journal Article
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Stochastic approximation to the T cell mediated specific response of the immune system Journal Article
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Structure and inference in annotated networks Journal Article
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Structure of Est3 reveals a bimodal surface with differential roles in telomere replication Journal Article
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Super-resolution bright-field nanometer topographic optical microscopy based on contrast Journal Article
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Synchronization in large directed networks of coupled phase oscillators Journal Article
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Synthetic Aperture Focusing for Short-Lag Spatial Coherence Imaging Journal Article
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THESEUS: maximum likelihood superpositioning and analysis of macromolecular structures Journal Article
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Teaching critical thinking Journal Article
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The Etiology of Stability and Change in Religious Values and Religious Attendance Journal Article
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The Internal Social Sustainability of Sanitation Infrastructure Journal Article
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The Surprising Creativity of Digital Evolution: A Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities Journal Article
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The effects of light intensity, temperature, and comonomer composition on the polymerization behavior of dimethacrylate dental resins Journal Article
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The even-electron rule in electrospray mass spectra of pesticides Journal Article
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The failing measurement of attitudes: How semantic determinants of individual survey responses come to replace measures of attitude strength Journal Article
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The fastest runner on artificial legs: different limbs, similar function? Journal Article
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The prevalence of DSM-IV attention-deficit/hyperactivity disorder: a meta-analytic review. Journal Article
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TheoH and Allan deviation as power-law noise estimators Journal Article
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Three dimensional tracking of fluorescent microparticles using a photon-limited double-helix response system Journal Article
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Three-dimensional structure determination from a single view Journal Article
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Toward DSM-V: An Item Response Theory Analysis of the Diagnostic Process for DSM-IV Alcohol Abuse and Dependence in Adolescents Journal Article
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Tutorial: Analysis of motor unit discharge characteristics from high-density surface EMG signals Journal Article
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Unbiased Clustering of Molecular Dynamics for Spatially Resolved Analysis of Chemically Heterogeneous Surfaces Journal Article
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Unfolding a codimension-two, discontinuous, Andronov-Hopf bifurcation Journal Article
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Unlocking biomarker discovery: large scale application of aptamer proteomic technology for early detection of lung cancer. Journal Article
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Using FRET to monitor protein-induced DNA bending: the TBP-TATA complex as a model system. Journal Article
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Validity of the executive function theory of attention-deficit/hyperactivity disorder: A meta-analytic review Journal Article
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Ventral striatal blood flow is altered by acute nicotine but not withdrawal from nicotine Journal Article
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Warming of the Antarctic ice-sheet surface since the 1957 International Geophysical Year Journal Article
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Wavelet-based estimation of a semiparametric generalized linear model of fMRI time-series Journal Article
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When Does Fading Enhance Perceptual Category Learning? Journal Article
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iBioSim 3: A Tool for Model-Based Genetic Circuit Design Journal Article
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