Biological Phenomena - Evolution, Molecular | CU Experts

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Trans-splicing Journal Article
A New Mechanistic Scenario for the Origin and Evolution of Vertebrate Cartilage Journal Article
A Simple Method for Estimating Informative Node Age Priors for the Fossil Calibration of Molecular Divergence Time Analyses Journal Article
A Structural Basis for the Recognition of 2′-Deoxyguanosine by the Purine Riboswitch Journal Article
A fast and accurate method for detection of IBD shared haplotypes in genome-wide SNP data Journal Article
A mechanism for the association of amino acids with their codons and the origin of the genetic code Journal Article
A model for the origin of internal eliminated segments (IESs) and gene rearrangement in stichotrichous ciliates Journal Article
A simple dependence between protein evolution rate and the number of protein-protein interactions Journal Article
A supergene underlies linked variation in color and morphology in a Holarctic songbird Journal Article
Adjusting for selection on synonymous sites in estimates of evolutionary distance Journal Article
Amphioxus and lamprey AP-2 genes: implications for neural crest evolution and migration patterns Journal Article
An Evolutionary Screen Highlights Canonical and Noncanonical Candidate Antiviral Genes within the Primate TRIM Gene Family Journal Article
Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe Journal Article
Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G Journal Article
Ancient and Recent Adaptive Evolution of Primate Non-Homologous End Joining Genes Journal Article
Ancient evolutionary origin of the neural crest gene regulatory network Journal Article
Ancient origins of metazoan gonadotropin-releasing hormone and their receptors revealed by phylogenomic analyses Journal Article
Ape parasite origins of human malaria virulence genes Journal Article
Bacterial communities of Bartonella-Positive fleas: Diversity and community assembly patterns Journal Article
COMPARATIVE ANALYSIS OF COMPLETE CHLOROPLAST GENOME SEQUENCE AND INVERSION VARIATION IN LASTHENIA BURKEI (MADIEAE, ASTERACEAE) Journal Article
COMPARATIVE ANATOMY, MORPHOLOGY, AND MOLECULAR PHYLOGENETICS OF THE AFRICAN GENUS SATANOCRATER (ACANTHACEAE) Journal Article
CRISPR/Cas9-mediated mutagenesis in the sea lamprey Petromyzon marinus: a powerful tool for understanding ancestral gene functions in vertebrates Journal Article
Choosing among alternative trees of multigene families Journal Article
Chromatin environment, transcriptional regulation, and splicing distinguish lincRNAs and mRNAs Journal Article
Chromosome rearrangements shape the diversification of secondary metabolism in the cyclosporin producing fungus Tolypocladium inflatum Journal Article
Clonal Interference, Multiple Mutations and Adaptation in Large Asexual Populations Journal Article
Coevolution of gene expression among interacting proteins Journal Article
Comparative analysis of testis protein evolution in rodents Journal Article
Comparative analysis of the mitochondrial genomes of six newly sequenced diatoms reveals group II introns in the barcoding region of cox1 Journal Article
Comparison of methods for estimating the nucleotide substitution matrix Journal Article
Concerted evolution of duplicated mitochondrial control regions in three related seabird species Journal Article
Conformational properties of oligonucleotides. Journal Article
Conservation and divergence of Bmp2a, Bmp2b, and Bmp4 expression patterns within and between dentitions of teleost fishes Journal Article
Conservation of a dinucleotide simple sequence repeat locus in sharks Journal Article
Conservation of regional gene expression in mouse and human brain Journal Article
Contrasting evolutionary histories of the legless lizards slow worms (Anguis) shaped by the topography of the Balkan Peninsula Journal Article
Control of yeast retrotransposons mediated through nucleoporin evolution Journal Article
Crawling Out of the RNA World Journal Article
Cytonuclear disequilibrium and genetic drift in a natural population of ponderosa pine Journal Article
DNA analysis of ancient dogs of the Americas: Identifying possible founding haplotypes and reconstructing population histories Journal Article
Detecting putative orthologs Journal Article
Development of bat flight: Morphologic and molecular evolution of bat wing digits Journal Article
Differential Effects of a Mutation on the Normal and Promiscuous Activities of Orthologs: Implications for Natural and Directed Evolution Journal Article
Differential regulation of p53 target genes: it's (core promoter) elementary Journal Article
Discordant evolution of the adjacent antiretroviral genes TRIM22 and TRIM5 in mammals Journal Article
Divergent evolution within protein superfolds inferred from profile-based phylogenetics Journal Article
Diversification of R2R3-MYB Transcription Factors in the Tomato Family Solanaceae Journal Article
Diversity and evolution of the repetitive genomic content in Cannabis sativa Journal Article
Dynamics of beneficial epidemics Journal Article
EVOLUTIONARY DIVERSIFICATION OF REEF CORALS: A COMPARISON OF THE MOLECULAR AND FOSSIL RECORDS Journal Article
Editorial overview: Developmental mechanisms, patterning and evolution Journal Article
Entropy and charge in molecular evolution - the case of phosphate Journal Article
Enzyme evolution: innovation is easy, optimization is complicated Journal Article
EvoChromo: towards a synthesis of chromatin biology and evolution Journal Article
Evolution of Biological Catalysis: Ribozyme to RNP Enzyme Journal Article
Evolution of Tetrahymena ribozyme mutants with increased structural stability Journal Article
Evolution of a behavior-linked microsatellite-containing element in the 5′ flanking region of the primate AVPR1A gene Journal Article
Evolution of new enzymes by gene duplication and divergence Journal Article
Evolution of the endothelin pathway drove neural crest cell diversification Journal Article
Evolution of vertebrate gill covers via shifts in an ancient Pou3f3 enhancer Journal Article
Evolutionarily Conserved Allosteric Communication in Protein Tyrosine Phosphatases Journal Article
Evolutionary rate depends on number of protein-protein interactions independently of gene expression level Journal Article
Evolutionary rate in the protein interaction network Journal Article
Extensive chloroplast genome rearrangement amongst three closely related Halamphora spp. (Bacillariophyceae), and evidence for rapid evolution as compared to land plants Journal Article
Familiar Neighbors, but Not Relatives, Enhance Fitness in a Territorial Mammal Journal Article
From oligonucleotide shapes to genomic SELEX: Novel biological regulatory loops Journal Article
Function and evolution of local repeats in the Firre locus Journal Article
Functional and evolutionary genomics of Mycobacterium tuberculosis:: Insights from genomic deletions in 100 strains Journal Article
Functional genomic analysis of the rates of protein evolution Journal Article
GENETIC HITCHHIKING AND THE DYNAMIC BUILDUP OF GENOMIC DIVERGENCE DURING SPECIATION WITH GENE FLOW Journal Article
GENOMICS OF COMPOSITAE WEEDS: EST LIBRARIES, MICROARRAYS, AND EVIDENCE OF INTROGRESSION Journal Article
Gene regulatory evolution and the origin of macroevolutionary novelties: Insights from the neural crest Journal Article
Genetic Code Evolution Investigated through the Synthesis and Characterisation of Proteins from Reduced-Alphabet Libraries Journal Article
Genetics and evolution of weedy Helianthus annuus populations:: adaptation of an agricultural weed Journal Article
Genetics of alternative splicing evolution during sunflower domestication Journal Article
Genome reduction in an abundant and ubiquitous soil bacterium 'Candidatus Udaeobacter copiosus' Journal Article
Genomic islands of divergence are not affected by geography of speciation in sunflowers Journal Article
Genomic organization, expression, and phylogenetic analysis of Ca2+ channel beta 4 genes in 13 vertebrate species Journal Article
Genomic structure and functional control of the Dlx3-7 bigene cluster Journal Article
Glacial refugia of limber pine (Pinus flexilis James) inferred from the population structure of mitochondrial DNA Journal Article
Global Distribution of Polaromonas Phylotypes - Evidence for a Highly Successful Dispersal Capacity Journal Article
Gonadotropin-releasing hormone by any other name would smell as sweet Journal Article
Gonadotropin-releasing hormone in invertebrates: Structure, function, and evolution Journal Article
Gonadotropin-releasing hormone in protostomes: Insights from functional studies on Aplysia californica Journal Article
Hedgehog signaling is required at multiple stages of zebrafish tooth development Journal Article
High affinity ligands from in vitro selection:: Complex targets Journal Article
Historic cycles of fragmentation and expansion in Parnassius smintheus (Papilionidae) inferred using mitochondrial DNA Journal Article
Historical and Current Perspectives on the Systematics of the 'Enigmatic' Diatom Genus Rhoicosphenia (Bacillariophyta), with Single and Multi-Molecular Marker and Morphological Analyses and Discussion on the Monophyly of 'Monoraphid' Diatoms Journal Article
Homology among telomeric end-protection proteins Journal Article
Hopeful monsters and morphogens at the beach Journal Article
How Large Should Whales Be? Journal Article
How to Recruit a Promiscuous Enzyme to Serve a New Function Journal Article
Identification of Owl Monkey CD4 Receptors Broadly Compatible with Early-Stage HIV-1 Isolates Journal Article
Identification of a Genomic Reservoir for New TRIM Genes in Primate Genomes Journal Article
Inhibitory cross-talk upon introduction of a new metabolic pathway into an existing metabolic network Journal Article
Insights and inferences about integron evolution from genomic data Journal Article
Insights from Amphioxus into the Evolution of Vertebrate Cartilage Journal Article
Insights from the amphioxus genome on the origin of vertebrate neural crest Journal Article
Integron diversity in heavy-metal-contaminated mine tailings and inferences about integron evolution Journal Article
Inversion, duplication, and changes in gene context are associated with human chromosome 18 evolution. Journal Article
Is tetralogy true? Lack of support for the "one-to-four rule" Journal Article
Lamprey lecticans link new vertebrate genes to the origin and elaboration of vertebrate tissues Journal Article
Localization and Functional Characterization of a Novel Adipokinetic Hormone in the Mollusk, Aplysia californica Journal Article
Low sequence variation in the gene encoding the human beta-myosin heavy chain Journal Article
Manipulation of Fgf and Bmp signaling in teleost fishes suggests potential pathways for the evolutionary origin of multicuspid teeth Journal Article
Mechanism and evolution of DNA primases Journal Article
Meeting review: American genetics association symposium on the genetics of speciation Journal Article
Microbial life at -13 °C in the brine of an ice-sealed Antarctic lake Journal Article
Modeling somatic evolution in tumorigenesis Journal Article
Modified nucleotidesmay have enhanced early RNA catalysis Journal Article
Molecular Evolution across the Asteraceae: Micro- and Macroevolutionary Processes Journal Article
Molecular evolution of anthocyanin pigmentation genes following losses of flower color Journal Article
Molecular evolution of the antiretroviral TRIM5 gene Journal Article
Molecular phylogeny of the diatom genera Amphora and Halamphora (Bacillariophyta) with a focus on morphological and ecological evolution Journal Article
Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years Journal Article
Natural variation in gene expression between wild and weedy populations of Helianthus annuus Journal Article
New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes Journal Article
Nociceptor-Enriched Genes Required for Normal Thermal Nociception Journal Article
Non-human Primate Schlafen11 Inhibits Production of Both Host and Viral Proteins Journal Article
Nuku, a family of primate retrocopies derived from KU70 Journal Article
One, two, infinity: Genomes filled with aptamers Journal Article
Opinion - Regulatory diversity among metazoan co-activator complexes Journal Article
Optimization of input patterns and neuronal properties to evoke motor neuron synchronization Journal Article
Origin of African Physacanthus (Acanthaceae) via Wide Hybridization Journal Article
Paralogy and orthology of tyrosine kinases that can extend the life span of Caenorhabditis elegans Journal Article
Patterns of sequence variability and divergence at the diminutive gene region of Drosophila melanogaster: complex patterns suggest an ancestral selective sweep. Journal Article
Phylogenetic Relationships and Functional Genes: Distribution of a Gene (mnxG) Encoding a Putative Manganese-Oxidizing Enzyme in Bacillus Species Journal Article
Phylogenetic conservation of disulfide-linked, dimeric acetylcholine receptor pentamers in southern ocean electric rays Journal Article
Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA Journal Article
Phylogenetics is the New Genetics (for Most of Biodiversity) Journal Article
Phylogeny of elasmobranchs based on LSU and SSU ribosomal RNA genes Journal Article
Phylogeny of hammerhead sharks (Family Sphyrnidae) inferred from mitochondrial and nuclear genes Journal Article
Phylogeny of the genus Hirundo and the Barn Swallow subspecies complex Journal Article
Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints Journal Article
Population genetic structure in Atlantic and Pacific Ocean common murres (Uria aalge): natural replicate tests of post-Pleistocene evolution Journal Article
Positive selection of yeast nonhomologous end-joining genes and a retrotransposon conflict hypothesis Journal Article
Proposal for a human genome evolution project Journal Article
Protein dispensability and rate of evolution Journal Article
Protein dynamics and the immunological evolution of molecular recognition Journal Article
RNase P: interface of the RNA and protein worlds Journal Article
Rapid adaptive evolution in novel environments acts as an architect of population range expansion Journal Article
Rapid bursts and slow declines: on the possible evolutionary trajectories of enzymes Journal Article
Rapid evolution of BRCA1 and BRCA2 in humans and other primates Journal Article
Rapid genome-wide evolution in Brassica rapa populations following drought revealed by sequencing of ancestral and descendant gene pools Journal Article
Recent host-shifts in ranaviruses: signatures of positive selection in the viral genome Journal Article
Recurrent positive selection at bgcn, a key determinant of germ line differentiation, does not appear to be driven by simple coevolution with its partner protein bam. Journal Article
Reductions in complexity of mitochondrial genomes in lichen-forming fungi shed light on genome architecture of obligate symbioses Journal Article
Regulatory activities of transposable elements: from conflicts to benefits Journal Article
Regulatory evolution of innate immunity through co-option of endogenous retroviruses Journal Article
Relationships of diversity, disparity, and their evolutionary rates in squirrels (Sciuridae) Journal Article
Resolving the paradox of common, harmful, heritable mental disorders: Which evolutionary genetic models work best? Journal Article
Retroviruses facilitate the rapid evolution of the mammalian placenta Journal Article
Reverse transcriptase motifs in the catalytic subunit of telomerase Journal Article
SELEX and the evolution of genomes Journal Article
SPECIES SELECTION AND THE MACROEVOLUTION OF CORAL COLONIALITY AND PHOTOSYMBIOSIS Journal Article
Selection on VPS13A linked to migration in a songbird Journal Article
Shedding light: a phylotranscriptomic perspective illuminates the origin of photosymbiosis in marine bivalves Journal Article
Sleeping to fuel the immune system: mammalian sleep and resistance to parasites Journal Article
Slow worm, Anguis fragilis (Reptilia: Anguidae) as a species complex: Genetic structure reveals deep divergences Journal Article
Snake venom gene expression is coordinated by novel regulatory architecture and the integration of multiple co-opted vertebrate pathways Journal Article
Species-Specific Features of DARC, the Primate Receptor for Plasmodium vivax and Plasmodium knowlesi Journal Article
Species-level diversification of African dwarf crocodiles (Genus Osteolaemus): A geographic and phylogenetic perspective Journal Article
Structural basis for diversity in the SAM clan of riboswitches Journal Article
Structural characterization of histone H2A variants. Journal Article
Structural implications of novel diversity in eucaryal RNase P RNA Journal Article
Structural perspective on the activation of RNase P RNA by protein Journal Article
Structure of the Drosophila nucleosome core particle highlights evolutionary constraints on the H2A-H2B histone dimer Journal Article
Substitution rates of organelle and nuclear genes in sharks: Implicating metabolic rate (again) Journal Article
Synonymous mutations make dramatic contributions to fitness when growth is limited by a weak-link enzyme Journal Article
Telomerase and Telomere-Associated Proteins: Structural Insights into Mechanism and Evolution Journal Article
Telomerase catalytic subunit homologs from fission yeast and human Journal Article
Telomere capping proteins are structurally related to RPA with an additional telomere-specific domain Journal Article
The Dlx gene complement of the leopard shark, Triakis semifasciata, resembles that of mammals: Implications for genomic and morphological evolution of jawed vertebrates Journal Article
The ENCODE (ENCyclopedia of DNA elements) Project Journal Article
The Effect of Species Representation on the Detection of Positive Selection in Primate Gene Data Sets Journal Article
The Emergence and Loss of Gonadotropin-Releasing Hormone in Protostomes: Orthology, Phylogeny, Structure, and Function Journal Article
The Evolution and Genetics of Carotenoid Processing in Animals Journal Article
The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster Journal Article
The Unfolded Protein Response in Secretory Cell Function Chapter
The amphioxus SoxB family: Implications for the evolution of vertebrate placodes Journal Article
The amphioxus genome illuminates vertebrate origins and cephalochordate biology Journal Article
The ancient sarcomeric myosins found in specialized muscles Journal Article
The complete mitochondrial genome of the Warm Springs pupfish, Cyprinodon nevadensis pectoralis Journal Article
The correlated evolution of Runx2 tandem repeats, transcriptional activity, and facial length in Carnivora Journal Article
The crystal structure of a hyperthermophilic archaeal TATA-box binding protein. Journal Article
The genetic core of the universal ancestor Journal Article
The genetics of adaptation to novel environments: selection on germination timing in Arabidopsis thaliana Journal Article
The genome of the truffle-parasite Tolypocladium ophioglossoides and the evolution of antifungal peptaibiotics Journal Article
The origin of the RNA world: Co-evolution of genes and metabolism Journal Article
The phylogenetic relationships of the extant pelicans inferred from DNA sequence data Journal Article
The subdiffusive targeting problem Journal Article
The sunflower (Helianthus annuus L.) genome reflects a recent history of biased accumulation of transposable elements Journal Article
The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution Journal Article
Three types of rescue can avert extinction in a changing environment Journal Article
Time for a change Journal Article
Trans-splicing and operons in C. elegans. Journal Article
Transcription factor binding variation in the evolution of gene regulation Journal Article
Transgenic analysis of Dlx regulation in fish tooth development reveals evolutionary retention of enhancer function despite organ loss Journal Article
Transposon fingerprinting using low coverage whole genome shotgun sequencing in Cacao (Theobroma cacao L.) and related species Journal Article
Triton's trident: cryptic Neogene divergences in a marine clam (Lasaea australis) correspond to Australia's three temperate biogeographic provinces Journal Article
Unexpected absence of the Epstein-Barr virus (EBV) lyLMP-1 open reading frame in tumor virus isolates: Lack of correlation between Met129 status and EBV strain identity Journal Article
Uniform binding of aminoacyl-tRNAs to elongation factor Tu by thermodynamic compensation Journal Article
tRNA residues evolved to promote translational accuracy. Journal Article
tRNA residues that have coevolved with their anticodon to ensure uniform and accurate codon recognition. Journal Article

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