Nucleoproteins - RNA-Binding Proteins
PubMed MeSh Term
Overview
subject area of
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'Oming in on RNA-protein interactions Journal Article
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Escherichia coli DbpA is an RNA helicase that requires hairpin 92 of 23S rRNA Journal Article
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Lin28a transgenic mice manifest size and puberty phenotypes identified in human genetic association studies Journal Article
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mag-1, a homolog of Drosophila mago nashi regulates hermaphrodite germ-line sex determination in Caenorhabditis elegans Journal Article
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A SPECIFIC, UV-INDUCED RNA PROTEIN CROSS-LINK USING 5-BROMOURIDINE-SUBSTITUTED RNA Journal Article
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A coat for all sequences Journal Article
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A novel family of C. elegans snRNPs contains proteins associated with trans-splicing Journal Article
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A role for a rat homolog of staufen in the transport of RNA to neuronal dendrites Journal Article
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A specific RNA structural motif mediates high affinity binding by the HIV-1 nucleocapsid protein (NCp7) Journal Article
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A thermodynamic analysis of the sequence-specific binding of RNA by bacteriophage MS2 coat protein Journal Article
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ADAR1 limits stress granule formation through both translation-dependent and translation-independent mechanisms Journal Article
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AN RNA-PROTEIN CONTACT DETERMINED BY 5-BROMOURIDINE SUBSTITUTION, PHOTO-CROSS-LINKING AND SEQUENCING Journal Article
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Absence of mutations in DICE1/DDX26 gene in human cancer cell lines with frequent 13q14 deletions Journal Article
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Activating RNAs associate with Mediator to enhance chromatin architecture and transcription Journal Article
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Alanine scanning of MS2 coat protein reveals protein-phosphate contacts involved in thermodynamic hot spots. Journal Article
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An uncapped RNA suggests a model for Caenorhabditis elegans polycistronic pre-mRNA processing. Journal Article
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Arginine methylation promotes translation repression activity of eIF4G-binding protein, Scd6 Journal Article
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BACTERIOPHAGE-T4 REGA PROTEIN BINDS TO MESSENGER-RNAS AND PREVENTS TRANSLATION INITIATION Journal Article
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Biochemical Properties and Biological Functions of FET Proteins Journal Article
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Bioinformatics Analysis to Identify RNA-Protein Interactions in Oogenesis. Journal Article
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Building specificity with nonspecific RNA-binding proteins Journal Article
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CRYSTAL-STRUCTURE OF THE T4 REGA TRANSLATIONAL REGULATOR PROTEIN AT 1.9-ANGSTROM RESOLUTION Journal Article
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Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: delineation of a novel sub-family of bacterial DEAD proteins Journal Article
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Comparative Haploid Genetic Screens Reveal Divergent Pathways in the Biogenesis and Trafficking of Glycophosphatidylinositol-Anchored Proteins Journal Article
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Configurational Preferences of Arylamide alpha-Helix Mimetics via Alchemical Free Energy Calculations of Relative Binding Affinities Journal Article
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Control of somatic tissue differentiation by the long non-coding RNA TINCR Journal Article
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Cooperative binding of ATP and RNA substrates to the DEAD/H protein DbpA Journal Article
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Coupled Caspase and N-End Rule Ligase Activities Allow Recognition and Degradation of Pluripotency Factor LIN-28 during Non-Apoptotic Development Journal Article
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Crystal structure of the essential N-terminal domain of telomerase reverse transcriptase Journal Article
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DGCR8-dependent microRNA biogenesis is essential for skin development Journal Article
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DNMT1-interacting RNAs block gene-specific DNA methylation Journal Article
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Differential recognition of the polypyrimidine-tract by the general splicing factor U2AF65 and the splicing repressor sex-lethal Journal Article
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Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster Journal Article
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Drosophila ATR in double-strand break repair Journal Article
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Drosophila sex-lethal protein mediates polyadenylation switching in the female germline Journal Article
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EFFICIENT PROTEIN-FACILITATED SPLICING OF THE YEAST MITOCHONDRIAL BI5 INTRON Journal Article
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Emerging Roles for Intermolecular RNA-RNA Interactions in RNP Assemblies Journal Article
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Enhancer elements activate the weak 3' splice site of alpha-tropomyosin exon 2. Journal Article
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Escherichia coli DbpA is a 3' --> 5' RNA helicase. Journal Article
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Essential regions of Saccharomyces cerevisiae telomerase RNA: separate elements for Est1p and Est2p interaction. Journal Article
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Evaluation of methylphosphonates as analogs for detecting phosphate contacts in RNA-protein complexes Journal Article
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Expanded encyclopaedias of DNA elements in the human and mouse genomes Journal Article
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Exploring Sequence Space to Identify Binding Sites for Regulatory RNA-Binding Proteins Journal Article
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FASTKD1 and FASTKD4 have opposite effects on expression of specific mitochondrial RNAs, depending upon their endonuclease-like RAP domain Journal Article
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Fast-Find: A novel computational approach to analyzing combinatorial motifs Journal Article
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Feed-Forward Regulation of a Cell Fate Determinant by an RNA-Binding Protein Generates Asymmetry in Yeast Journal Article
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Functional redundancy of worm splicelosomal proteins U1A and U2B" Journal Article
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GW182 family proteins are crucial for microRNA-mediated gene silencing Journal Article
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Genes involved in pre-mRNA 3′-end formation and transcription termination revealed by a lin-15 operon Muv suppressor screen Journal Article
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Genome-Wide Identification of Alternatively Spliced mRNA Targets of Specific RNA-Binding Proteins Journal Article
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Genome-wide analysis of Musashi-2 targets reveals novel functions in governing epithelial cell migration Journal Article
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Genome-wide screening for DNA variants associated with reading and language traits Journal Article
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Genomic and cDNA selection-amplification identifies transcriptome-wide binding sites for the Drosophila protein sex-lethal Journal Article
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Global analysis of yeast mRNPs Journal Article
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Heat shock in C. elegans induces downstream of gene transcription and accumulation of double-stranded RNA Journal Article
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High yield photocrosslinking of a 5-iodocytidine (IC) substituted RNA to its associated protein Journal Article
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Human Pumilio Proteins Recruit Multiple Deadenylases to Efficiently Repress Messenger RNAs Journal Article
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Identification and analysis of the interaction between Edc3 and Dcp2 in Saccharomyces cerevisiae. Journal Article
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Identification of Endogenous mRNA-Binding Proteins in Yeast Using Crosslinking and PolyA Enrichment Journal Article
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Identification of G2/M targets for the MAP kinase pathway by functional proteomics Journal Article
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Identification of proteins binding coding and non-coding human RNAs using protein microarrays Journal Article
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Impaired response to exercise intervention in the vasculature in metabolic syndrome Journal Article
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In vitro selection of a novel catalytic RNA: Characterization of a sulfur alkylation reaction and interaction with a small peptide Journal Article
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In vivo cross-linking followed by polyA enrichment to identify yeast mRNA binding proteins. Journal Article
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Interaction of Escherichia coli DbpA with 23S rRNA in different functional states of the enzyme. Journal Article
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Interaction of R17 coat protein with its RNA binding site for translational repression. Journal Article
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Interaction of R17 coat protein with synthetic variants of its ribonucleic acid binding site. Journal Article
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Interactions of Escherichia coli RNA with bacteriophage MS2 coat protein: genomic SELEX Journal Article
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Intrinsically Disordered Regions Can Contribute Promiscuous Interactions to RNP Granule Assembly Journal Article
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Isolation of yeast and mammalian stress granule cores Journal Article
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Kinetic analysis of the RNA-dependent adenosinetriphosphatase activity of DbpA, an Escherichia coli DEAD protein specific for 23S ribosomal RNA Journal Article
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Kinetic and thermodynamic characterization of the R17 coat protein-ribonucleic acid interaction. Journal Article
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Lessons from eRNAs: understanding transcriptional regulation through the lens of nascent RNAs Journal Article
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Lin28 promotes the proliferative capacity of neural progenitor cells in brain development Journal Article
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Lsm2 and Lsm3 bridge the interaction of the Lsm1-7 complex with Pat1 for decapping activation Journal Article
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MUTANTS OF THE BACTERIOPHAGE-MS2 COAT PROTEIN THAT ALTER ITS COOPERATIVE BINDING TO RNA Journal Article
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Mago Nashi and Tsunagi/Y14, respectively, regulate Drosophila germline stem cell differentiation and oocyte specification Journal Article
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Mago Nashi, Tsunagi/Y14, and Ranshi form a complex that influences oocyte differentiation in Drosophila melanogaster Journal Article
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Mitochondrial RNA granules are fluid condensates positioned by membrane dynamics Journal Article
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Modifying the specificity of an RNA backbone contact Journal Article
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Modular regulatory principles of large non-coding RNAs Journal Article
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Multiple RNA- and DNA- binding proteins exhibit direct transfer of polynucleotides with implications for target- site search Journal Article
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Mutagenesis of a stacking contact in the MS2 coat protein-RNA complex Journal Article
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Nuclear-Import Receptors Reverse Aberrant Phase Transitions of RNA-Binding Proteins with Prion-like Domains Journal Article
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Nucleoprotein photo-cross-linking using halopyrimidine-substituted RNAs Journal Article
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Nucleoside and nucleotide inactivation of R17 coat protein: evidence for a transient covalent RNA-protein bond. Journal Article
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Numerous interactions act redundantly to assemble a tunable size of P bodies in Saccharomyces cerevisiae Journal Article
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PAR-TERRA is the main contributor to telomeric repeat-containing RNA transcripts in normal and cancer mouse cells. Journal Article
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PHOTO-CROSS-LINKING OF 5-IODOURACIL SUBSTITUTED RNA AND DNA TO PROTEINS Journal Article
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PROTON NMR AND STRUCTURAL FEATURES OF A 24-NUCLEOTIDE RNA HAIRPIN Journal Article
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Photocross-linking of nucleic acids to associated proteins Journal Article
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Poly-combing the genome for RNA Journal Article
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Posttranscriptional modulation of TERC by PAPD5 inhibition rescues hematopoietic development in dyskeratosis congenita Journal Article
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Principles and Properties of Eukaryotic mRNPs Journal Article
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Promiscuous RNA binding by Polycomb repressive complex 2 Journal Article
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Quantitative assessment of EF-1α•GTP binding to aminoacyl-tRNAs, aminoacyl-viral RNA, and tRNA shows close correspondence to the RNA binding properties of EF-Tu Journal Article
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Quantitative interaction screen of telomeric repeat-containing RNA reveals novel TERRA regulators Journal Article
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RIBONUCLEOPROTEIN COMPLEXES OF R17 COAT PROTEIN AND A TRANSLATIONAL OPERATOR ANALOG Journal Article
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RNA Binding Protein Vigilin Collaborates with miRNAs To Regulate Gene Expression for Caenorhabditis elegans Larval Development Journal Article
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RNA decapping inside and outside of processing bodies Journal Article
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RNA in biological condensates INTRODUCTION Journal Article
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RNA partitioning into stress granules is based on the summation of multiple interactions Journal Article
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RNA recognition by the DNA end-binding Ku heterodimer Journal Article
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RNA self-assembly contributes to stress granule formation and defining the stress granule transcriptome Journal Article
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RNA structure comes of age Journal Article
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RNA-BINDING PROPERTIES OF THE COAT PROTEIN FROM BACTERIOPHAGE GA Journal Article
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RNA-BINDING SITE OF R17 COAT PROTEIN Journal Article
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RNA-binding proteins direct myogenic cell fate decisions Journal Article
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RNA-protein interactions that regulate pre-mRNA splicing Journal Article
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RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome Journal Article
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ROLES OF OPERATOR AND NON-OPERATOR RNA SEQUENCES IN BACTERIOPHAGE R17 CAPSID ASSEMBLY Journal Article
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Rapid and widespread suppression of self-renewal by microRNA-203 during epidermal differentiation Journal Article
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Report Compromised nonsense-mediated RNA decay results in truncated RNA-binding protein production upon DUX4 expression Journal Article
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Riboswitches: Emerging themes in RNA structure and function Journal Article
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Scaffold function of long non-coding RNA HOTAIR in protein ubiquitination Journal Article
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Sequence-specific interaction of R17 coat protein with its ribonucleic acid binding site. Journal Article
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Sex lethal and U2 small nuclear ribonucleoprotein auxiliary factor (U2AF(65)) recognize polypyrimidine tracts using multiple modes of binding Journal Article
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Somatic sex determination in Caenorhabditis elegans is modulated by SUP-26 repression of tra-2 translation Journal Article
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Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation Journal Article
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Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle Journal Article
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Structure and dynamics of the iron responsive element RNA: Implications for binding of the RNA by iron regulatory binding proteins Journal Article
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Structure of a class II TrmH tRNA-modifying enzyme from Aquifex aeolicus Journal Article
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TDP-1, the Caenorhabditis elegans ortholog of TDP-43, limits the accumulation of double-stranded RNA Journal Article
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TDP-43 and RNA form amyloid-like myo-granules in regenerating muscle Journal Article
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THE DISSONANCE MUTATION AT THE NO-ON-TRANSIENT-A LOCUS OF DROSOPHILA-MELANOGASTER - GENETIC-CONTROL OF COURTSHIP SONG AND VISUAL BEHAVIORS BY A PROTEIN WITH PUTATIVE RNA-BINDING MOTIFS Journal Article
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THE ROLE OF 2'-HYDROXYL GROUPS IN AN RNA-PROTEIN INTERACTION Journal Article
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Targeted mRNA Decay by RNA Binding Protein AUF1 Regulates Adult Muscle Stem Cell Fate, Promoting Skeletal Muscle Integrity Journal Article
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Tau aggregates are RNA-protein assemblies that mislocalize multiple nuclear speckle components Journal Article
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Tau, RNA, and RNA-Binding Proteins: Complex Interactions in Health and Neurodegenerative Diseases Journal Article
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Telomere biology disorders: time for moving towards the clinic? Journal Article
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The Caenorhabditis elegans Ortholog of TDP-43 Regulates the Chromatin Localization of the Heterochromatin Protein 1 Homolog HPL-2 Journal Article
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The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA Journal Article
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The DNA binding high mobility group box protein family functionally binds RNA Journal Article
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The RNA-binding protein Tsunagi interacts with Mago Nashi to establish polarity and localize oskar mRNA during Drosophila oogenesis Journal Article
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The carboxy-terminal domain of the DExD/H protein YxiN is sufficient to confer specificity for 23 S rRNA Journal Article
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The conserved RNA recognition motif 3 of U2 snRNA auxiliary factor (U2AF65) is essential in vivo but dispensable for activity in vitro Journal Article
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The developmental timing regulator AIN-1 interacts with miRISCs and may target the argonaute protein ALG-1 to cytoplasmic P bodies in C. elegans Journal Article
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The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold. Journal Article
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The landscape of eukaryotic mRNPs Journal Article
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The multilayered complexity of ceRNA crosstalk and competition Journal Article
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The tRNA specificity of Thermus thermophilus EF-Tu Journal Article
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Transposable elements modulate human RNA abundance and splicing via specific RNA-protein interactions Journal Article
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UBQLN2 restrains the domesticated retrotransposon PEG10 to maintain neuronal health in ALS Journal Article
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USING CIRCULAR PERMUTATION ANALYSIS TO REDEFINE THE R17 COAT PROTEIN-BINDING SITE Journal Article
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Unbiased Reconstruction of a Mammalian Transcriptional Network Mediating Pathogen Responses Journal Article
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Using phosphorothioate-substituted RNA to investigate the thermodynamic role of phosphates in a sequence specific RNA-protein complex Journal Article
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Widespread RNA binding by chromatin-associated proteins Journal Article
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YxiN is a modular protein combining a DEx(D/H) core and a specific RNA-binding domain. Journal Article
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dsRNA-induced condensation of antiviral proteins modulates PKR activity Journal Article
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hnRNPK recognition of the B motif of Xist and other biological RNAs Journal Article
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mago nashi mediates the posterior follicle cell-to-oocyte signal to organize axis formation in Drosophila Journal Article
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