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• De novo designed peptide-based amyloid fibrils  Journal Article
• A COUPLED EQUILIBRIUM APPROACH TO STUDY NUCLEOSOME THERMODYNAMICS  Journal Article
• A KINETIC AND THERMODYNAMIC FRAMEWORK FOR THE HAMMERHEAD RIBOZYME REACTION  Journal Article
• A New Analysis of Mars "Special Regions": Findings of the Second MEPAG Special Regions Science Analysis Group (SR-SAG2)  Journal Article
• A POSITIVE ENTROPY CHANGE FOR GUANOSINE BINDING AND FOR THE CHEMICAL STEP IN THE TETRAHYMENA RIBOZYME REACTION  Journal Article
• A Simple Model for Barrier Frequencies for Enzymatic Reactions  Journal Article
• A Thermodynamic Model for Nap1-Histone Interactions  Journal Article
• A kinetic and thermodynamic analysis of cleavage site mutations in the hammerhead ribozyme  Journal Article
• A motor that makes its own track: Helicase unwinding of DNA  Journal Article
• A moving story  Journal Article
• A mutation in the beta-myosin rod associated with hypertrophic cardiomyopathy has an unexpected molecular phenotype  Journal Article
• A network of heterogeneous hydrogen bonds in GNRA tetraloops  Journal Article
• A new look at the microtubule binding patterns of dimeric kinesins  Journal Article
• A supramolecular hydrogel prepared from a thymine-containing artificial nucleolipid: study of assembly and lyotropic mesophases  Journal Article
• A therapeutic aptamer inhibits angiogenesis by specifically targeting the heparin binding domain of VEGF₁₆₅  Journal Article
• A thermodynamic analysis of the sequence-specific binding of RNA by bacteriophage MS2 coat protein  Journal Article
• A universal mode of helix packing in RNA  Journal Article
• AN RNA MUTATION THAT INCREASES THE AFFINITY OF AN RNA PROTEIN-INTERACTION  Journal Article
• Acceptor Energy Level Control of Charge Photogeneration in Organic Donor/Acceptor Blends  Journal Article
• Accurate and efficient corrections for missing dispersion interactions in molecular Simulations  Journal Article
• Activation Thermodynamics and H/D Kinetic Isotope Effect of the H_ox to H_redH⁺ Transition in [FeFe] Hydrogenase  Journal Article
• Advances in fluorescence labeling strategies for dynamic cellular imaging  Journal Article
• Aggregation of granulocyte colony stimulating factor under physiological conditions: Characterization and thermodynamic inhibition  Journal Article
• Alanine scanning of MS2 coat protein reveals protein-phosphate contacts involved in thermodynamic hot spots.  Journal Article
• Amino acid specificity in translation.  Journal Article
• An early transition state for folding of the P4-P6 RNA domain  Journal Article
• An introduction to best practices in free energy calculations.  Journal Article
• Apparent Activation Energies Associated with Protein Dynamics on Hydrophobic and Hydrophilic Surfaces  Journal Article
• Application of a thermodynamic model to the prediction of phase separations in freeze-concentrated formulations for protein lyophilization  Journal Article
• Atomistic protein folding simulations on the submillisecond time scale using worldwide distributed computing  Journal Article
• B₁₂ cofactors directly stabilize an mRNA regulatory switch  Journal Article
• Banding of NMR-derived methyl order parameters: Implications for protein dynamics  Journal Article
• Best Practices in Free Energy Calculations for Drug Design  Journal Article
• Biochemical and physicochemical properties of phosphorodithioate DNA  Journal Article
• Biological potential of martian hydrothermal systems  Journal Article
• Biophysically Defined and Cytocompatible Covalently Adaptable Networks as Viscoelastic 3D Cell Culture Systems  Journal Article
• Blind prediction of cyclohexane-water distribution coefficients from the SAMPL5 challenge  Journal Article
• CALCIUM(II) SITE SPECIFICITY - EFFECT OF SIZE AND CHARGE ON METAL-ION BINDING TO AN EF-HAND-LIKE SITE  Journal Article
• CALCIUM-DEPENDENT AND CALCIUM-INDEPENDENT AFFINITIES OF CALMODULIN FOR CALMODULIN-BINDING PROTEINS DETERMINED BY FLUORESCENCE TECHNIQUES  Chapter
• CATALYSIS OF RNA CLEAVAGE BY A RIBOZYME DERIVED FROM THE GROUP-I INTRON OF ANABAENA PRE-TRNA(LEU)  Journal Article
• CHARACTERIZATION OF RNA HAIRPIN LOOP STABILITY  Journal Article
• CONTRIBUTIONS OF 2'-HYDROXYL GROUPS OF THE RNA SUBSTRATE TO BINDING AND CATALYSIS BY THE TETRAHYMENA RIBOZYME - AN ENERGETIC PICTURE OF AN ACTIVE-SITE COMPOSED OF RNA  Journal Article
• CUUCGG HAIRPINS - EXTRAORDINARILY STABLE RNA SECONDARY STRUCTURES ASSOCIATED WITH VARIOUS BIOCHEMICAL PROCESSES  Journal Article
• Calorimetric Measurement of SH2 Domain Ligand Affinities  Journal Article
• Characterization of protein-protein interactions critical for poliovirus replication: Analysis of 3AB and VPg binding to the RNA-dependent RNA polymerase  Journal Article
• Charge Hopping Dynamics along a Disordered Chain in Quantum Environments: Comparative Study of Different Rate Kernels  Journal Article
• Charge Transfer Dynamics between Photoexcited CdS Nanorods and Mononuclear Ru Water-Oxidation Catalysts  Journal Article
• Chloroplast thylakoid structure in evergreen leaves employing strong thermal energy dissipation  Journal Article
• Circular substrates of the hammerhead ribozyme shift the internal equilibrium further toward cleavage  Journal Article
• Collapsing bacterial cylinders  Journal Article
• Comparative Hydrogen-Deuterium Exchange for a Mesophilic vs Thermophilic Dihydrofolate Reductase at 25 degrees C: Identification of a Single Active Site Region with Enhanced Flexibility in the Mesophilic Protein  Journal Article
• Comparison of Methods To Reweight from Classical Molecular Simulations to QM/MM Potentials  Journal Article
• Comparison of crystal structure interactions and thermodynamics for stabilizing mutations in the Tetrahymena ribozyme  Journal Article
• Comparison of efficiency and bias of free energies computed by exponential averaging, the Bennett acceptance ratio, and thermodynamic integration  Journal Article
• Comparison of the global structure and dynamics of native and unmodified tRNA  Journal Article
• Computational exploration of heterolytic halogen-carbon bond scission photoreactions in ruthenium polypyridyl complexes.  Journal Article
• Configurational Preferences of Arylamide alpha-Helix Mimetics via Alchemical Free Energy Calculations of Relative Binding Affinities  Journal Article
• Congo red populates partially unfolded states of an amyloidogenic protein to enhance aggregation and amyloid fibril formation  Journal Article
• Connecting Protein Conformation and Dynamics with Ligand-Receptor Binding Using Three-Color Forster Resonance Energy Transfer Tracking  Journal Article
• Conserved thermochemistry of guanosine nucleophile binding for structurally distinct group I ribozymes  Journal Article
• Controlling poly(β-amino ester) network properties through macromer branching  Journal Article
• Converging free energies of binding in cucurbit[7]uril and octa-acid host-guest systems from SAMPL4 using expanded ensemble simulations  Journal Article
• Cooperative binding of single-stranded telomeric DNA by the Pot1 protein of Schizosaccharomyces pombe  Journal Article
• Counteracting effects of renal solutes on amyloid fibril formation by immunoglobulin light chains  Journal Article
• Cryogenic Ion Spectroscopy of the Green Fluorescent Protein Chromophore in Vacuo  Journal Article
• Crystal structures of nucleosome core particles in complex with minor groove DNA-binding ligands  Journal Article
• DETERMINATION OF THE FREE-ENERGY COUPLING FOR BINDING OF CALCIUM-IONS AND TROPONIN-I TO CALMODULIN  Journal Article
• DIVALENT METAL-IONS AND THE INTERNAL EQUILIBRIUM OF THE HAMMERHEAD RIBOZYME  Journal Article
• Deciphering the mechanism of thermodynamic accommodation of telomeric oligonucleotide sequences by the Schizosaccharomyces pombe protection of telomeres 1 (Pot1pN) protein  Journal Article
• Development and Benchmarking of Open Force Field 2.0.0: The Sage Small Molecule Force Field  Journal Article
• Direct calculation of the binding free energies of FKBP ligands  Journal Article
• Direct evidence for base-mediated decomposition of alkyl hydroperoxides (ROOH) in the gas phase  Journal Article
• Diversity in peptide recognition by the SH2 domain of SH2B1  Journal Article
• Dynamic and Thermodynamic Response of the Ras Protein Cdc42Hs upon Association with the Effector Domain of PAK3  Journal Article
• Dynamic effects on reaction rates in a Michael addition catalyzed by chalcone isomerase. Beyond the frozen environment approach  Journal Article
• Dynamics of Protein Kinases: Insights from Nuclear Magnetic Resonance  Journal Article
• EFFECT OF MONOVALENT CATION-INDUCED TELOMERIC DNA-STRUCTURE ON THE BINDING OF OXYTRICHA TELOMERIC PROTEIN  Journal Article
• EFFICIENT PROTEIN-FACILITATED SPLICING OF THE YEAST MITOCHONDRIAL BI5 INTRON  Journal Article
• Effects of phase separating systems on lyophilized hemoglobin  Journal Article
• Effects of polyvalent cations on the folding of an rRNA three-way junction and binding of ribosomal protein S15  Journal Article
• Effects of sucrose on conformational equilibria and fluctuations within the native-state ensemble of proteins  Journal Article
• Electron affinities of 1,1-diaryl-2,3,4,5-tetraphenyisiloles:: Direct measurements and comparison with experimental and theoretical estimates  Journal Article
• End-to-end stacking and liquid crystal condensation of 6-to 20-base pair DNA duplexes  Journal Article
• Energetics and affinity of the histone octamer for defined DNA sequences  Journal Article
• Energetics and cooperativity of tertiary hydrogen bonds in RNA structure  Journal Article
• Enhanced mechanosensing of cells in synthetic 3D matrix with controlled biophysical dynamics  Journal Article
• Entrapping intermediates of thermal aggregation in α-helical proteins with low concentration of guanidine hydrochloride  Journal Article
• Entropy in molecular recognition by proteins  Journal Article
• Entropy of water in the hydration layer of major and minor grooves of DNA  Journal Article
• Essential slow degrees of freedom in protein-surface simulations: A metadynamics investigation  Journal Article
• Estimation of secondary structure in ribonucleic acids.  Journal Article
• Evaluation of Solid Fuel Char Briquettes from Human Waste  Journal Article
• Evidence for increased local flexibility in psychrophilic alcohol dehydrogenase relative to its thermophilic homologue  Journal Article
• Exocyclic amine of the conserved G center dot U pair at the cleavage site of the Tetrahymena ribozyme contributes to 5'-splice site selection and transition state stabilization  Journal Article
• Expanded Ensemble Methods Can be Used to Accurately Predict Protein-Ligand Relative Binding Free Energies  Journal Article
• Experimental and Theoretical Study of the Atmospheric Chemistry and Global Warming Potential of SO₂F₂  Journal Article
• Experimental and theoretical investigations of the inelastic and reactive scattering dynamics of O(³P)+D₂  Journal Article
• Exploiting conformational dynamics to facilitate formation and trapping of electron-transfer photoproducts in metal complexes.  Journal Article
• Extreme Dynamics in the BamA β-Barrel Seam  Journal Article
• FEATHER: Automated Analysis of Force Spectroscopy Unbinding and Unfolding Data via a Bayesian Algorithm  Journal Article
• FREE-ENERGY CONTRIBUTIONS OF G.U AND OTHER TERMINAL MISMATCHES TO HELIX STABILITY  Journal Article
• Formation of Mercury Sulfide from Hg(II)-Thiolate Complexes in Natural Organic Matter  Journal Article
• Free energy difference to create the M-OH* intermediate of the oxygen evolution reaction by time-resolved optical spectroscopy  Journal Article
• Free-energy changes of bacteriorhodopsin point mutants measured by single-molecule force spectroscopy  Journal Article
• From phage display to structure: an interplay of enthalpy and entropy in the binding of the LDHSLHS polypeptide to silica  Journal Article
• GUANOSINE BINDING TO THE TETRAHYMENA RIBOZYME - THERMODYNAMIC COUPLING WITH OLIGONUCLEOTIDE BINDING  Journal Article
• Gas-phase carbene radical anions: New mechanistic insights  Journal Article
• Gas-phase water-mediated equilibrium between methylglyoxal and its geminal diol  Journal Article
• Glycoside Hydrolase Processivity Is Directly Related to Oligosaccharide Binding Free Energy  Journal Article
• Graphene Blisters with Switchable Shapes Controlled by Pressure and Adhesion  Journal Article
• Ground-State Thermodynamics of Bistable Redox-Active Donor-Acceptor Mechanically Interlocked Molecules  Journal Article
• Hammerhead cleavage of the phosphorodithioate linkage  Journal Article
• Hammerhead ribozyme kinetics  Journal Article
• High concentration formulations of recombinant human interleukin-1 receptor antagonist: II. Aggregation kinetics  Journal Article
• High pressure refolding of recombinant human growth hormone from insoluble aggregates - Structural transformations, kinetic barriers, and energetics  Journal Article
• High-pressure refolding of bikunin: Efficacy and thermodynamics  Journal Article
• High-pressure refolding of disulfide-cross-linked lysozyme aggregates: Thermodynamics and optimization  Journal Article
• High-pressure studies of aggregation of recombinant human interleukin-1 receptor antagonist: Thermodynamics, kinetics, and application to accelerated formulation studies  Journal Article
• Histone -: DNA binding free energy cannot be measured in dilution-driven dissociation experiments  Journal Article
• IMPROVED FREE-ENERGY PARAMETERS FOR PREDICTIONS OF RNA DUPLEX STABILITY  Journal Article
• INHIBITION OF THE HAMMERHEAD RIBOZYME BY NEOMYCIN  Journal Article
• INTERACTION OF A FLUORESCENT N-DANSYLAZIRIDINE DERIVATIVE OF TROPONIN-I WITH CALMODULIN IN THE ABSENCE AND PRESENCE OF CALCIUM  Journal Article
• Identification of the determinants for the specific recognition of single-strand telomeric DNA by Cdc13  Journal Article
• Identification of thermodynamically relevant interactions between EF-Tu and backbone elements of tRNA  Journal Article
• Identifying ligand binding sites and poses using GPU-accelerated Hamiltonian replica exchange molecular dynamics  Journal Article
• Improved Free-Energy Landscape Quantification Illustrated with a Computationally Designed Protein-Ligand Interaction  Journal Article
• Improved estimation of secondary structure in ribonucleic acids.  Journal Article
• Improved free-energy landscape reconstruction of bacteriorhodopsin highlights local variations in unfolding energy  Journal Article
• Improving Force Field Accuracy by Training against Condensed-Phase Mixture Properties  Journal Article
• Influence of hydrostatic pressure and cosolutes on RNA tertiary structure  Journal Article
• Insights into the Dynamics of Specific Telomeric Single-Stranded DNA Recognition by Pot1pN  Journal Article
• Interactions between Hofmeister Anions and the Binding Pocket of a Protein  Journal Article
• Intermolecular Forces Model for Lipid Microbubble Shells  Journal Article
• Investigating the Role of Phosphorylation in the Binding of Silaffin Peptide R5 to Silica with Molecular Dynamics Simulations  Journal Article
• Is the sequence-specific binding of aminoacyl-tRNAs by EF-Tu universal among bacteria?  Journal Article
• Kinetic and thermodynamic characterization of the R17 coat protein-ribonucleic acid interaction.  Journal Article
• Kinetics and energetics of assembly, nucleation, and growth of aggregates and fibrils for an amyloidogenic protein - Insights into transition states from pressure, temperature, and co-solute studies  Journal Article
• Kinetics and thermodynamics of the interaction of 5-fluoro-2'-deoxyuridylate with thymidylate synthase.  Journal Article
• Lattice study of the conformal window in QCD-like theories  Journal Article
• Lessons learned from comparing molecular dynamics engines on the SAMPL5 dataset  Journal Article
• Ligand-dependent folding of the three-way junction in the purine riboswitch  Journal Article
• Low-energy spectrum of iron-sulfur clusters directly from many-particle quantum mechanics  Journal Article
• MECHANISM OF DNA-REPLICATION FIDELITY FOR 3 MUTANTS OF DNA-POLYMERASE-I - KLENOW FRAGMENT KF(EXO+), KF(POLA5), AND KF(EXO-)  Journal Article
• MUTANTS OF THE BACTERIOPHAGE-MS2 COAT PROTEIN THAT ALTER ITS COOPERATIVE BINDING TO RNA  Journal Article
• MUTATIONS IN A NONCONSERVED SEQUENCE OF THE TETRAHYMENA RIBOZYME INCREASE ACTIVITY AND SPECIFICITY  Journal Article
• Maintenance of quaternary structure in the frozen state stabilizes lactate dehydrogenase during freeze-drying  Journal Article
• Mathematical model of the role of degradation on matrix development in hydrogel scaffold.  Journal Article
• Mechanism of interaction of thymidylate synthetase with 5-fluorodeoxyuridylate.  Journal Article
• Mechanistic Study on the Solution-Phase n-Doping of 1,3-Dimethyl-2-aryl-2,3-dihydro-1H-benzoimidazole Derivatives  Journal Article
• Mediating Electrostatic Binding of 1-Butyl-3-methylimidazolium Chloride to Enzyme Surfaces Improves Conformational Stability  Journal Article
• Membrane orientation and position of the C2 domain from cPLA2 by site-directed spin labeling  Journal Article
• Metal ion dependence, thermodynamics, and kinetics for intramolecular docking of a GAAA tetraloop and receptor connected by a flexible linker  Journal Article
• Minimum Energy Path to Membrane Pore Formation and Rupture  Journal Article
• Mixing Properties of Lyophilized Protein Systems: A Spectroscopic and Calorimetric Study  Journal Article
• Modifying the specificity of an RNA backbone contact  Journal Article
• Molecular Driving Forces in Peptide Adsorption to Metal Oxide Surfaces  Journal Article
• Molecular Thermometry  Journal Article
• Multistate reweighting and configuration mapping together accelerate the efficiency of thermodynamic calculations as a function of molecular geometry by orders of magnitude  Journal Article
• Multistep Drug Intercalation: Molecular Dynamics and Free Energy Studies of the Binding of Daunomycin to DNA  Journal Article
• Mutagenesis of a stacking contact in the MS2 coat protein-RNA complex  Journal Article
• Mutational analysis of the purine riboswitch aptamer domain  Journal Article
• Mutations at the same amino acid in myosin that cause either skeletal or cardiac myopathy have distinct molecular phenotypes  Journal Article
• NEOMYCIN INHIBITION OF THE HAMMERHEAD RIBOZYME INVOLVES IONIC INTERACTIONS  Journal Article
• Negative-ion photoelectron spectroscopy, gas-phase acidity, and thermochemistry of the peroxyl radicals CH₃OO and CH₃CH₂OO  Journal Article
• Nonadiabatic trajectory studies of NaI(H(2)O)(n) photodissociation dynamics  Journal Article
• Nucleosome assembly protein 1 exchanges histone H2A-H2B dimers and assists nucleosome sliding  Journal Article
• Ocean-Atmosphere Interactions in the Emergence of Complexity in Simple Chemical Systems  Journal Article
• On the molecular mechanism of drug intercalation into DNA: A simulation study of the intercalation pathway, free energy, and DNA structural changes  Journal Article
• On the role of hydrogel structure and degradation in controlling the transport of cell-secreted matrix molecules for engineered cartilage  Journal Article
• On-Chip Acousto Thermal Shift Assay for Rapid and Sensitive Assessment of Protein Thermodynamic Stability  Journal Article
• Open Force Field Evaluator: An Automated, Efficient, and Scalable Framework for the Estimation of Physical Properties from Molecular Simulation  Journal Article
• Optimizing immunization protocols to elicit broadly neutralizing antibodies  Journal Article
• Organic aerosols and the origin of life: An hypothesis  Journal Article
• Origami structures with a critical transition to bistability arising from hidden degrees of freedom  Journal Article
• Overview of the SAMPL5 host-guest challenge: Are we doing better?  Journal Article
• Oxidation of methionine residues in recombinant human interleukin-1 receptor antagonist: Implications of conformational stability on protein oxidation kinetics  Journal Article
• POLYMER-SUPPORTED RNA-SYNTHESIS AND ITS APPLICATION TO TEST THE NEAREST-NEIGHBOR MODEL FOR DUPLEX STABILITY  Journal Article
• PROTON NMR AND STRUCTURAL FEATURES OF A 24-NUCLEOTIDE RNA HAIRPIN  Journal Article
• Parallelized-over-parts computation of absolute binding free energy with docking and molecular dynamics  Journal Article
• Partial molar volume, surface area, and hydration changes for equilibrium unfolding and formation of aggregation transition state:: High-pressure and cosolute studies on recombinant human IFN-γ  Journal Article
• Photoelectron Spectroscopy and Thermochemistry of the Peroxyformate Anion  Journal Article
• Photoelectron spectroscopy of isolated multiply negatively charged oligonucleotides  Journal Article
• Predicting the binding affinities of misacylated tRNAs for Thermus thermophilus EF-Tu.GTP.  Journal Article
• Preferential exclusion of sucrose from recombinant interleukin-1 receptor antagonist: Role in restricted conformational mobility and compaction of native state  Journal Article
• Probing Carbohydrate Product Expulsion from a Processive Cellulase with Multiple Absolute Binding Free Energy Methods  Journal Article
• Probing Hydrophobic Interactions Using Trajectories of Amphiphilic Molecules at a Hydrophobic/Water Interface  Journal Article
• Probing in Real Time the Soft Crystallization of DNA-Capped Nanoparticles  Journal Article
• Probing surface-adsorbate interactions through active particle dynamics  Journal Article
• Product Binding Varies Dramatically between Processive and Nonprocessive Cellulase Enzymes  Journal Article
• Product-state-resolved dynamics of the elementary reaction of atomic oxygen with molecular hydrogen, O(³P) + D₂ → OD(X²Π) + D  Journal Article
• Protein dynamics and the immunological evolution of molecular recognition  Journal Article
• Protein-solute interactions affect the outcome of ultrafiltration/diafiltration operations  Journal Article
• QUANTITATING AND ENGINEERING THE ION SPECIFICITY OF AN EF-HAND-LIKE CA2+ BINDING-SITE  Journal Article
• Quantifying Chromatin-Associated Interactions: The HI-FI System  Journal Article
• Quantifying the Native Energetics Stabilizing Bacteriorhodopsin by Single-Molecule Force Spectroscopy  Journal Article
• Quantifying the energetic interplay of RNA tertiary and secondary structure interactions  Journal Article
• Quantitation of free energy profiles in RNA-ligand interactions by nucleotide analog interference mapping  Journal Article
• RIBONUCLEOPROTEIN COMPLEXES OF R17 COAT PROTEIN AND A TRANSLATIONAL OPERATOR ANALOG  Journal Article
• RIBOZYME-CATALYZED AND NONENZYMATIC REACTIONS OF PHOSPHATE DIESTERS - RATE EFFECTS UPON SUBSTITUTION OF SULFUR FOR A NONBRIDGING PHOSPHORYL OXYGEN ATOM  Journal Article
• RNA SUBSTRATE BINDING-SITE IN THE CATALYTIC CORE OF THE TETRAHYMENA RIBOZYME  Journal Article
• Rapid and simple protein-stability screens: application to membrane proteins  Journal Article
• Reconstituting Intracellular Vesicle Fusion Reactions: The Essential Role of Macromolecular Crowding  Journal Article
• Refined solution structure of the iron-responsive element RNA using residual dipolar couplings  Journal Article
• Refinement of local and long-range structural order in theophylline-binding RNA using C-13-H-1 residual dipolar couplings and restrained molecular dynamics  Journal Article
• Refolding of Proteins From Inclusion Bodies Is Favored by a Diminished Hydrophobic Effect at Elevated Pressures  Journal Article
• Replica exchange and expanded ensemble simulations as Gibbs sampling: Simple improvements for enhanced mixing  Journal Article
• Role of the loop containing residue 115 in the induced-fit mechanism of the bacterial cell wall biosynthetic enzyme MurA  Journal Article
• Roles of conformational stability and colloidal stability in the aggregation of recombinant human granulocyte colony-stimulating factor  Journal Article
• Rontgen's electrode-free elastomer actuators without electromechanical pull-in instability  Journal Article
• SELF-SPLICING RNA - IMPLICATIONS FOR EVOLUTION  Journal Article
• SPECIFIC RNA-BINDING BY Q-BETA COAT PROTEIN  Journal Article
• STABILITY OF XGCGCP, GCGCYP, AND XGCGCYP HELIXES - AN EMPIRICAL ESTIMATE OF THE ENERGETICS OF HYDROGEN-BONDS IN NUCLEIC-ACIDS  Journal Article
• STRUCTURAL FEATURES THAT GIVE RISE TO THE UNUSUAL STABILITY OF RNA HAIRPINS CONTAINING GNRA LOOPS  Journal Article
• Schools of skyrmions with electrically tunable elastic interactions  Journal Article
• Search for Flavor-Changing Neutral Currents in Top-Quark Decays t → Zq in pp Collisions at √s=8 TeV  Journal Article
• Self-Organized Gels in DNA/F-Actin Mixtures without Crosslinkers: Networks of Induced Nematic Domains with Tunable Density  Journal Article
• Self-complementary oligoribonucleotides: adenylic acid-uridylic acid block copolymers.  Journal Article
• Self-complementary oligoribonucleotides: effects of helix defects and guanylic acid-cytidylic acid base pairs.  Journal Article
• Self-organization in leaky threshold systems: The influence of near-mean field dynamics and its implications for earthquakes, neurobiology, and forecasting  Journal Article
• Sequence-specific recognition of DNA in the nucleosome by pyrrole-imidazole polyamides  Journal Article
• Sequestering of Eu(III) by a GAAA RNA tetraloop  Journal Article
• Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide-distributed computing  Journal Article
• Single polymer dynamics in an elongational flow  Journal Article
• Single-Molecule Conformational Dynamics of a Biologically Functional Hydroxocobalamin Riboswitch  Journal Article
• Single-Molecule Tracking of Polymer Surface Diffusion  Journal Article
• Single-particle measurements of phase partitioning between primary and secondary organic aerosols  Journal Article
• Site-Specific Patterning of Highly Ordered Nanocrystal Super lattices through Biomolecular Surface Confinement  Journal Article
• Site-directed mutagenesis reveals the thermodynamic requirements for single-stranded DNA recognition by the telomere-binding protein Cdc13  Journal Article
• Solvation free energies of amino acid side chain analogs for common molecular mechanics water models  Journal Article
• Specific volume and adiabatic compressibility measurements of native and aggregated recombinant human interleukin-1 receptor antagonist: Density differences enable pressure-modulated refolding  Journal Article
• Spectroscopy and Photochemistry of Sodium Chromate Ester Cluster Ions  Journal Article
• Stability of RNA hairpin loops: A 6 -C m -U 6 .  Journal Article
• Stability of p53 Homologs  Journal Article
• Stability of ribonucleic acid double-stranded helices.  Journal Article
• Stability, surface features, and atom leaching of palladium nanoparticles: toward prediction of catalytic functionality  Journal Article
• Stable ordering in Langmuir-Blodgett films  Journal Article
• Statistically Optimal Continuous Free Energy Surfaces from Biased Simulations and Multistate Reweighting  Journal Article
• Statistically optimal analysis of samples from multiple equilibrium states  Journal Article
• Structural and Biophysical Studies of Human PARP-1 in Complex with Damaged DNA  Journal Article
• Structure and dynamics of the iron responsive element RNA: Implications for binding of the RNA by iron regulatory binding proteins  Journal Article
• Structure and mechanism of purine-binding riboswitches  Journal Article
• Structure of a natural guanine-responsive riboswitch complexed with the metabolite hypoxanthine  Journal Article
• Structure-Assisted Functional Anchor Implantation in Robust Metal-Organic Frameworks with Ultra large Pores  Journal Article
• Structure-guided Mutational Analysis of Gene Regulation by the Bacillus subtilis pbuE Adenine-responsive Riboswitch in a Cellular Context  Journal Article
• Submicrosecond Time Resolution Atomic Force Microscopy for Probing Nanoscale Dynamics  Journal Article
• Suppression of eukaryotic translation termination by selected RNAs  Journal Article
• Surfactant-induced unfolding of cellulase: Kinetic studies  Journal Article
• Synthetic oligorotaxanes exert high forces when folding under mechanical load  Journal Article
• TERTIARY INTERACTIONS WITH THE INTERNAL GUIDE SEQUENCE MEDIATE DOCKING OF THE P1 HELIX INTO THE CATALYTIC CORE OF THE TETRAHYMENA RIBOZYME  Journal Article
• TFIIA changes the conformation of the DNA in TBP/TATA complexes and increases their kinetic stability  Journal Article
• THE 2,6-DIAMINOPURINE RIBOSIDE-CENTER-DOT-5-METHYLISOCYTIDINE WOBBLE BASE-PAIR - AN ISOENERGETIC SUBSTITUTION FOR THE STUDY OF G-CENTER-DOT-U PAIRS IN RNA  Journal Article
• THE EFFECT OF BASE MISMATCHES IN THE SUBSTRATE RECOGNITION HELICES OF HAMMERHEAD RIBOZYMES ON BINDING AND CATALYSIS  Journal Article
• THE IMPORTANCE OF BEING RIBOSE AT THE CLEAVAGE SITE IN THE TETRAHYMENA RIBOZYME REACTION  Journal Article
• THE SELF-SPLICING RNA OF TETRAHYMENA IS TRAPPED IN A LESS ACTIVE CONFORMATION BY GEL PURIFICATION  Journal Article
• THERMAL-STABILITY OF RNA HAIRPINS CONTAINING A 4-MEMBERED LOOP AND A BULGE NUCLEOTIDE  Journal Article
• Temperature Dependence of the Reaction between the Hydroxyl Radical and Organic Matter  Journal Article
• Temperature dependence of benzyl alcohol- and 8-anilinonaphthalene-1-sulfonate-induced aggregation of recombinant human interleukin-1 receptor antagonist  Journal Article
• Temperature dependence of protein motions in a thermophilic dihydrofolate reductase and its relationship to catalytic efficiency  Journal Article
• The 51-63 base pair of tRNA confers specificity for binding by EF-Tu.  Journal Article
• The Energetic Difference between Synthesis of Correct and Incorrect Base Pairs Accounts for Highly Accurate DNA Replication  Journal Article
• The Formation of CO by Thermal Decomposition of Formic Acid under Electrochemical Conditions of CO₂ Reduction  Journal Article
• The Histone Chaperone Nap1 Promotes Nucleosome Assembly by Eliminating Nonnucleosomal Histone DNA Interactions  Journal Article
• The Molecular Origin of Enthalpy/Entropy Compensation in Biomolecular Recognition  Journal Article
• The SAMPL6 SAMPLing challenge: assessing the reliability and efficiency of binding free energy calculations  Journal Article
• The Structure of a Tetrahydrofolate-Sensing Riboswitch Reveals Two Ligand Binding Sites in a Single Aptamer  Journal Article
• The Tetrahymena ribozyme cleaves a 5′-methylene phosphonate monoester ∼10²-fold faster than a normal phosphate diester:: Implications for enzyme catalysis of phosphoryl transfer reactions  Journal Article
• The Trouble with Chemical Energy: Why Understanding Bond Energies Requires an Interdisciplinary Systems Approach  Journal Article
• The affinity of elongation factor Tu for an aminoacyl-tRNA is modulated by the esterified amino acid.  Journal Article
• The application of statistical physics to evolutionary biology  Journal Article
• The energetics of organic synthesis inside and outside the cell  Journal Article
• The essential histone variant H2A.Z regulates the equilibrium between different chromatin conformational states  Journal Article
• The global conformation of the hammerhead ribozyme determined using residual dipolar couplings  Journal Article
• The interface between Escherichia coli elongation factor Tu and aminoacyl-tRNA.  Journal Article
• The kinetic cycle of cardiac troponin C: Calcium binding and dissociation at site II trigger slow conformational rearrangements  Journal Article
• The origin of the RNA world: Co-evolution of genes and metabolism  Journal Article
• The sequence at specific positions in the early transcribed region sets the rate of transcript synthesis by RNA polymerase II in vitro  Journal Article
• The structure-function dilemma of the hammerhead ribozyme.  Journal Article
• The tRNA specificity of Thermus thermophilus EF-Tu  Journal Article
• Theoretical Study of O-O Single Bond Formation in the Oxidation of Water by the Ruthenium Blue Dimer  Journal Article
• Theoretical Study of Water Oxidation by the Ruthenium Blue Dimer. II. Proton Relay Chain Mechanism for the Step [bpy(2)(HOO)(RuORuIV)-O-IV(OH)bpy(2)](4+) -> [bpy(2)(O-2(-))(RuORuIII)-O-IV(OH2)bpy(2)](4+)  Journal Article
• Thermodynamic Underpinnings of Cell Alignment on Controlled Topographies  Journal Article
• Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain  Journal Article
• Thermodynamic dissection of the substrate-ribozyme interaction in the hammerhead ribozyme  Journal Article
• Thermodynamic modulation of light chain amyloid fibril formation  Journal Article
• Thermodynamic stability of the P4-P6 domain RNA tertiary structure measured by temperature gradient gel electrophoresis  Journal Article
• Thermodynamic stability of wild-type and mutant p53 core domain.  Journal Article
• Thermodynamically Consistent Force Fields for the Assembly of Inorganic, Organic, and Biological Nanostructures: The INTERFACE Force Field  Journal Article
• Thermodynamics and kinetics for base-pair opening in the P1 duplex of the Tetrahymena group I ribozyme  Journal Article
• Thermodynamics of Coupled Protein Adsorption and Stability Using Hybrid Monte Carlo Simulations  Journal Article
• Thermodynamics, Disequilibrium, Evolution: Far-From-Equilibrium Geological and Chemical Considerations for Origin-Of-Life Research  Journal Article
• Toward Understanding Amino Acid Adsorption at Metallic Interfaces: A Density Functional Theory Study  Journal Article
• Transdermal gelation of methacrylated macromers with near-infrared light and gold nanorods  Journal Article
• Tuning the equilibrium ion affinity and selectivity of the EF-hand calcium binding motif: Substitutions at the gateway position  Journal Article
• Two-state model for helicase translocation and unwinding of nucleic acids  Journal Article
• Type III secretion system effector proteins are mechanically labile  Journal Article
• Understanding the origin of liquid crystal ordering of ultrashort double-stranded DNA  Journal Article
• Understanding the sequence specificity of tRNA binding to elongation factor Tu using tRNA mutagenesis.  Journal Article
• Uniform binding of aminoacyl-tRNAs to elongation factor Tu by thermodynamic compensation  Journal Article
• Using Molecular Simulation to Study Biocatalysis in Ionic Liquids  Chapter
• Using phosphorothioate-substituted RNA to investigate the thermodynamic role of phosphates in a sequence specific RNA-protein complex  Journal Article
• Water Hydrogen-Bond Dynamics around Amino Acids: The Key Role of Hydrophilic Hydrogen-Bond Acceptor Groups  Journal Article
• Water-Restructuring Mutations Can Reverse the Thermodynamic Signature of Ligand Binding to Human Carbonic Anhydrase  Journal Article
• Yeast CAF-1 assembles histone (H3-H4)2 tetramers prior to DNA deposition.  Journal Article
• n-Dopants Based on Dimers of Benzimidazoline Radicals: Structures and Mechanism of Redox Reactions  Journal Article
• tRNA conformity  Journal Article

broader concept

• Physical Phenomena  PubMed MeSh Term

narrower concept

• Convection  PubMed MeSh Term
• Entropy  PubMed MeSh Term
• Thermal Conductivity  PubMed MeSh Term
• Thermodynamics - Temperature  PubMed MeSh Term