Nucleic Acids Research
Journal
Overview
publication venue for
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RPA engages telomeric G-quadruplexes more effectively than CST
2023
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BioSimulators: a central registry of simulation engines and services for recommending specific tools
2022
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PARP inhibitors trap PARP2 and alter the mode of recruitment of PARP2 at DNA damage sites
2022
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CST does not evict elongating telomerase but prevents initiation by ssDNA binding
2021
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Solution structure(s) of trinucleosomes from contrast variation SAXS
2021
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SPRINT: a Cas13a-based platform for detection of small molecules
2020
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hnRNPK recognition of the B motif of Xist and other biological RNAs
2020
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Regulatory sharing between estrogen receptor α bound enhancers
2020
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Bending and looping of long DNA by Polycomb repressive complex 2 revealed by AFM imaging in liquid
2020
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Structural basis for 2′-deoxyguanosine recognition by the 2′-dG-II class of riboswitches
2019
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The glucocorticoid receptor DNA-binding domain recognizes RNA hairpin structures with high affinity
2019
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A versatile platform strain for high-fidelity multiplex genome editing
2019
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Mechanistic insights into histone deposition and nucleosome assembly by the chromatin assembly factor-1
2018
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A functional genetic screen reveals sequence preferences within a key tertiary interaction in cobalamin riboswitches required for ligand selectivity
2018
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Fission yeast telosomes: non-canonical histone-containing chromatin structures dependent on shelterin and RNA
2018
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Coloc-stats: a unified web interface to perform colocalization analysis of genomic features
2018
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The elongation factor Spn1 is a multi-functional chromatin binding protein
2018
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Genome-wide dose-dependent inhibition of histone deacetylases studies reveal their roles in enhancer remodeling and suppression of oncogenic super-enhancers
2018
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Force-activated DNA substrates for probing individual proteins interacting with single-stranded DNA
2017
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p53 regulates enhancer accessibility and activity in response to DNA damage
2017
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Intrinsically disordered RGG/RG domains mediate degenerate specificity in RNA binding
2017
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Arginine methylation promotes translation repression activity of eIF4G-binding protein, Scd6
2016
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Single molecule microscopy reveals mechanistic insight into RNA polymerase II preinitiation complex assembly and transcriptional activity
2016
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Sequence-dependent nanometer-scale conformational dynamics of individual RecBCD-DNA complexes
2016
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Genome-wide analysis of Musashi-2 targets reveals novel functions in governing epithelial cell migration
2016
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Bivalent interaction of the PZP domain of BRPF1 with the nucleosome impacts chromatin dynamics and acetylation
2016
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Nucleic acid-binding specificity of human FUS protein
2015
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Integrative genomic analysis reveals widespread enhancer regulation by p53 in response to DNA damage
2015
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Alternative Lengthening of Telomeres is characterized by reduced compaction of telomeric chromatin
2014
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Cycling of the E. coli lagging strand polymerase is triggered exclusively by the availability of a new primer at the replication fork
2014
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Inventory of telomerase components in human cells reveals multiple subpopulations of hTR and hTERT
2014
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NAR Breakthrough Article A dimeric state for PRC2
2014
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Scm3 deposits a (Cse4-H4)(2) tetramer onto DNA through a Cse4-H4 dimer intermediate
2014
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The telomeric protein Pot1 from Schizosaccharomyces pombe binds ssDNA in two modes with differing 3 ' end availability
2014
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The tenacious recognition of yeast telomere sequence by Cdc13 is fully exerted by a single OB-fold domain
2014
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ERK phosphorylation of MED14 in promoter complexes during mitogen-induced gene activation by Elk-1
2013
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Engineering modular 'ON' RNA switches using biological components
2013
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Many disease-associated variants of hTERT retain high telomerase enzymatic activity
2013
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Torsionally constrained DNA for single-molecule assays: an efficient, ligation-free method
2013
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The heterochromatic chromosome caps in great apes impact telomere metabolism
2013
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Linker histone H1.0 interacts with an extensive network of proteins found in the nucleolus
2013
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Bacteriophage SPP1 DNA replication strategies promote viral and disable host replication in vitro
2013
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Structure of Actin-related protein 8 and its contribution to nucleosome binding
2012
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Yeast CAF-1 assembles histone (H3-H4)2 tetramers prior to DNA deposition.
2012
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Myh7b/miR-499 gene expression is transcriptionally regulated by MRFs and Eos
2012
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Fluorescence strategies for high-throughput quantification of protein interactions
2012
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DNA-induced dimerization of the single-stranded DNA binding telomeric protein Pot1 from Schizosaccharomyces pombe
2012
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Is the sequence-specific binding of aminoacyl-tRNAs by EF-Tu universal among bacteria?
2011
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Molecular sensing by the aptamer domain of the FMN riboswitch: a general model for ligand binding by conformational selection
2011
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Biophysical analysis and small-angle X-ray scattering-derived structures of MeCP2-nucleosome complexes
2011
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Structure of p300 bound to MEF2 on DNA reveals a mechanism of enhanceosome assembly
2011
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Nucleosome accessibility governed by the dimer/tetramer interface
2011
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Synthesis of high-quality libraries of long (150mer) oligonucleotides by a novel depurination controlled process
2010
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Investigating the role of the Est3 protein in yeast telomere replication
2010
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A dominant negative mutant of the E. coli RNA helicase DbpA blocks assembly of the 50S ribosomal subunit.
2009
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LSM1 over-expression in Saccharomyces cerevisiae depletes U6 snRNA levels
2009
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SITEHOUND-web: a server for ligand binding site identification in protein structures
2009
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Specificity of the ribosomal A site for aminoacyl-tRNAs.
2009
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Inhibition of yeast telomerase action by the telomeric ssDNA-binding protein, Cdc13p
2009
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Probing the mechanism of recognition of ssDNA by the Cdc13-DBD
2008
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Mutation of the arginine finger in the active site of Escherichia coli DbpA abolishes ATPase and helicase activity and confers a dominant slow growth phenotype.
2008
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PBmice:: an integrated database system of piggyBac (PB) insertional mutations and their characterizations in mice
2008
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A randomized library approach to identifying functional lox site domains for the Cre recombinase
2007
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Thermodynamics and kinetics for base-pair opening in the P1 duplex of the Tetrahymena group I ribozyme
2007
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The bipartite architecture of the sRNA in an archaeal box C/D complex is a primary determinant of specificity
2006
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A mass spectrometry-based approach for identifying novel DNA polymerase substrates from a pool of dNTP analogues
2006
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Exploration of factors driving incorporation of unnatural dNTPS into DNA by Klenow fragment (DNA polymerase I) and DNA polymerase alpha
2005
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Interaction of Escherichia coli DbpA with 23S rRNA in different functional states of the enzyme.
2004
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Biochemical properties of phosphonoacetate and thiophosphonoacetate oligodeoxyribonucleotides
2003
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Yeast telomerase is specialized for C/A-rich RNA templates
2003
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Probing triplex formation by EPR spectroscopy using a newly synthesized spin label for oligonucleotides
2002
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Delineation of the high-affinity single-stranded telomeric DNA-binding domain of Saccharomyces cerevisiae Cdc13
2002
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A genetic screen identifies novel non-compatible IoxP sites
2002
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Expression and purification of recombinant human c-Fos/c-Jun that is highly active in DNA binding and transcriptional activation in vitro
2001
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Interactions of Escherichia coli RNA with bacteriophage MS2 coat protein: genomic SELEX
2000
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Computational identification of cis-acting elements affecting post-transcriptional control of gene expression in Saccharomyces cerevisiae
2000
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Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: delineation of a novel sub-family of bacterial DEAD proteins
1999
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Crosslinking of proteins to DNA in human nuclei using a 60 femtosecond 266 nm laser
1999
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Efficient bicistronic expression of cre in mammalian cells
1999
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A re-investigation of the thio effect at the hammerhead cleavage site
1999
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The Ribonuclease P Database
1999
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Comparative structure analysis of vertebrate ribonuclease P RNA
1998
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Analysis of the yeast genome: identification of new non-coding and small ORF-containing RNAs
1997
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dGTP-dependent processivity and possible template switching of Euplotes telomerase
1997
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RNA aptamers to the adenosine moiety of S-adenosyl methionine: structural inferences from variations on a theme and the reproducibility of SELEX
1997
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Libraries for genomic SELEX
1997
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Improved large scale culture of Methylophilus methylotrophus for C-13/N-15 labeling and random fractional deuteration of ribonucleotides
1996
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Structure and evolution of ribonuclease P RNA in Gram-positive bacteria
1996
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Inhibition of the erB-2 tyrosine kinase receptor in breast cancer cells by phosphoromonothioate and phosphorodithioate antisense oligonucleotides
1996
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mRNA turnover in yeast promoted by the MATalpha1 instability element
1996
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Conserved thermochemistry of guanosine nucleophile binding for structurally distinct group I ribozymes
1996
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Sequence of the polypyrimidine tract of the 3'-terminal 3' splicing signal can affect intron-dependent pre-mRNA processing in vivo
1996
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High yield photocrosslinking of a 5-iodocytidine (IC) substituted RNA to its associated protein
1996
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Base and sugar requirements for RNA cleavage of essential nucleoside residues in internal loop B of the hairpin ribozyme: Implications for secondary structure
1996
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Method for determining RNA 3' ends and application to human telomerase RNA
1996
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INTERACTIONS OF CALF THYMUS DNA-POLYMERASE-ALPHA WITH PRIMER/TEMPLATES
1995
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RNA LIGANDS TO HUMAN NERVE GROWTH-FACTOR
1995
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THE EFFECT OF BASE MISMATCHES IN THE SUBSTRATE RECOGNITION HELICES OF HAMMERHEAD RIBOZYMES ON BINDING AND CATALYSIS
1995
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PHOSPHORYLATION OF THE OXYTRICHA TELOMERE PROTEIN - POSSIBLE CELL-CYCLE REGULATION
1995
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INCREASED FREQUENCY OF DELETIONS IN THE MITOCHONDRIAL GENOME WITH AGE OF CAENORHABDITIS-ELEGANS
1995
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AN RNA-PROTEIN CONTACT DETERMINED BY 5-BROMOURIDINE SUBSTITUTION, PHOTO-CROSS-LINKING AND SEQUENCING
1994
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QUANTITATIVE-ANALYSIS OF RIBOSOME BINDING-SITES IN ESCHERICHIA-COLI
1994
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DETECTION OF DELETIONS IN THE MITOCHONDRIAL GENOME OF CAENORHABDITIS-ELEGANS
1994
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POLYADENYLATION SITE SELECTION CANNOT OCCUR IN-VIVO AFTER EXCISION OF THE 3'-TERMINAL INTRON
1993
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Isolation, sequencing and overexpression of the gene encoding the theta subunit of DNA polymerase III holoenzyme.
1993
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REPLACEMENT OF RNA HAIRPINS BY INVITRO SELECTED TETRANUCLEOTIDES
1993
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Characterization of ribonuclease P RNAs from thermophilic bacteria
1993
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Functional analysis of aC.elegans trans-splice acceptor
1993
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MUTATIONS AT THE GUANOSINE-BINDING SITE OF THE TETRAHYMENA RIBOZYME ALSO AFFECT SITE-SPECIFIC HYDROLYSIS
1992
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PREPARATION OF C-13 AND N-15 LABELED RNAS FOR HETERONUCLEAR MULTIDIMENSIONAL NMR-STUDIES
1992
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PREPARATION OF ISOTOPICALLY LABELED RIBONUCLEOTIDES FOR MULTIDIMENSIONAL NMR-SPECTROSCOPY OF RNA
1992
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AN ULTRAVIOLET LIGHT-INDUCED CROSS-LINK IN YEAST TRANSFER RNAPHE
1992
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NUMBERING SYSTEM FOR THE HAMMERHEAD
1992
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RECOGNITION NUCLEOTIDES FOR HUMAN PHENYLALANYL-TRANSFER RNA-SYNTHETASE
1992
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Analysis of chimeric mRNAs derived from theSTE3mRNA identifies multiple regions within yeast mRNAs that modulate mRNA decay
1992
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RNA-BINDING PROPERTIES OF THE COAT PROTEIN FROM BACTERIOPHAGE GA
1991
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MOLECULAR-CLONING OF TELOMERE-BINDING PROTEIN GENES FROM STYLONYCHIA-MYTILIS
1991
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A SELF-SPLICING GROUP-I INTRON IN THE NUCLEAR PRE-RIBOSOMAL-RNA OF THE GREEN-ALGA, ANKISTRODESMUS-STIPITATUS
1991
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A HAMMERHEAD RIBOZYME ALLOWS SYNTHESIS OF A NEW FORM OF THE TETRAHYMENA RIBOZYME HOMOGENEOUS IN LENGTH WITH A 3' END BLOCKED FOR TRANSESTERIFICATION
1991
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BINDING OF THE BACTERIOPHAGE-T4 REGA PROTEIN TO MESSENGER-RNA TARGETS - AN INITIATOR AUG IS REQUIRED
1990
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THIOPHOSPHATE INTERFERENCE EXPERIMENTS LOCATE PHOSPHATES IMPORTANT FOR THE HAMMERHEAD RNA SELF-CLEAVAGE REACTION
1990
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Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF).
1990
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EFFECT OF MONOVALENT CATION-INDUCED TELOMERIC DNA-STRUCTURE ON THE BINDING OF OXYTRICHA TELOMERIC PROTEIN
1990
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COMPLETE CDNA SEQUENCE OF RAT ATRIAL MYOSIN LIGHT CHAIN-1 - PATTERNS OF EXPRESSION DURING DEVELOPMENT AND WITH HYPERTENSION
1990
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SEQUENCE-DEPENDENT STRUCTURAL VARIATIONS OF HAMMERHEAD RNA ENZYMES
1990
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Nucleotide sequence of the 10Sa RNA gene of the βpurple eubacteriumAlcaligenes eutrophus
1990
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THE CAENORHABDITIS-ELEGANS GENOME CONTAINS MONOMORPHIC MINISATELLITES AND SIMPLE SEQUENCES
1989
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COMPLETE NUCLEOTIDE-SEQUENCE OF FULL LENGTH CDNA FOR RAT ALPHA-CARDIAC MYOSIN HEAVY-CHAIN
1989
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COMPLETE NUCLEOTIDE-SEQUENCE OF FULL LENGTH CDNA FOR RAT BETA-CARDIAC MYOSIN HEAVY-CHAIN
1989
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A TETRAHYMENA INTRON NUCLEOTIDE CONNECTED TO THE GTP ARGININE SITE
1989
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EXPRESSION AND DNA-SEQUENCE ANALYSIS OF A HUMAN-EMBRYONIC SKELETAL-MUSCLE MYOSIN HEAVY-CHAIN GENE
1989
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OXYTRICHA TELOMERIC NUCLEOPROTEIN COMPLEXES RECONSTITUTED WITH SYNTHETIC DNA
1989
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VENTRICULAR MYOSIN LIGHT CHAIN-1 IS DEVELOPMENTALLY REGULATED AND DOES NOT CHANGE IN HYPERTENSION
1989
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ORGANIZATION AND EXPRESSION OF THE COX6 GENETIC-LOCUS IN SACCHAROMYCES-CEREVISIAE - MULTIPLE MESSENGER-RNAS WITH DIFFERENT 3' TERMINI ARE TRANSCRIBED FROM COX6 AND REGULATED DIFFERENTIALLY
1989
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CHARACTERIZATION OF RNA HAIRPIN LOOP STABILITY
1988
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NUCLEOTIDE-SEQUENCES OF THE BACTERIOPHAGE-T2 AND BACTERIOPHAGE-T6 GENE 32 MESSENGER-RNAS
1988
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NUCLEOTIDE-SEQUENCES OF THE BACTERIOPHAGE-T2 AND BACTERIOPHAGE-T6 GENE 32 MESSENGER-RNAS
1988
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Detection of an epitope, not required for polymerization, that is conserved between E.coli DNA polymerases I and III and bacteriophage T4 DNA polymerase.
1988
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A COMPARISON OF 2 PHAGE COAT PROTEIN RNA INTERACTIONS
1988
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PHYLOGENETIC-RELATIONSHIPS AND ALTERED GENOME STRUCTURES AMONG TETRAHYMENA MITOCHONDRIAL DNAS
1988
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AN RNA MUTATION THAT INCREASES THE AFFINITY OF AN RNA PROTEIN-INTERACTION
1987
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OLIGORIBONUCLEOTIDE SYNTHESIS USING T7 RNA-POLYMERASE AND SYNTHETIC DNA TEMPLATES
1987
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SEQUENCE OF THE COMPLETE P-PROTEIN GENE AND PART OF THE M PROTEIN GENE FROM THE HISTIDINE TRANSPORT OPERON OF ESCHERICHIA-COLI COMPARED TO THAT OF SALMONELLA-TYPHIMURIUM
1987
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STRUCTURAL CONVENTIONS FOR GROUP-I INTRONS
1987
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HUMAN CARDIAC MYOSIN HEAVY-CHAIN GENES AND THEIR LINKAGE IN THE GENOME
1987
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A single gene encoding vitellogenin in the sea urchinStrongylocentrotus purpuratus: sequence at the 5′ end
1987
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The adjacent dnaZ and dnaX genes of Escherichia coli are contained within one continuous open reading frame.
1986
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CAENORHABDITIS-ELEGANS DNA DOES NOT CONTAIN 5-METHYLCYTOSINE AT ANY TIME DURING DEVELOPMENT OR AGING
1986
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QUANTITATIVE-ANALYSIS OF THE RELATIONSHIP BETWEEN NUCLEOTIDE-SEQUENCE AND FUNCTIONAL-ACTIVITY
1986
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TRANSLATIONAL REGULATION OF EXPRESSION OF THE BACTERIOPHAGE-T4 LYSOZYME GENE
1986
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NUCLEOTIDE CHEMISTRY .18. CHEMICAL SYNTHESIS OF BRANCHED RNA
1986
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CHARACTERIZATION OF DIVERSE FORMS OF MYOSIN HEAVY-CHAIN EXPRESSED IN ADULT HUMAN SKELETAL-MUSCLE
1986
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SITES OF CIRCULARIZATION OF THE TETRAHYMENA RIBOSOMAL-RNA IVS ARE DETERMINED BY SEQUENCE AND INFLUENCED BY POSITION AND SECONDARY STRUCTURE
1985
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SELF-CATALYZED CYCLIZATION OF THE INTERVENING SEQUENCE RNA OF TETRAHYMENA - INHIBITION BY INTERCALATING DYES
1985
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SELF-CATALYZED CYCLIZATION OF THE INTERVENING SEQUENCE RNA OF TETRAHYMENA - INHIBITION BY METHIDIUMPROPYL.EDTA AND LOCALIZATION OF THE MAJOR DYE BINDING-SITES
1985
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SEQUENCE REQUIREMENTS FOR SELF-SPLICING OF THE TETRAHYMENA-THERMOPHILA PRE-RIBOSOMAL RNA
1985
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STUDIES ON GENE-CONTROL REGIONS .20. BINDING-STUDIES OF SV40 T-ANTIGEN TO SV40 BINDING SITE-II
1985
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TRANSCRIPTIONAL MEASUREMENTS OF MOUSE REPEATED DNA-SEQUENCES
1985
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The nucleotide sequence of a nematode vitellogenin gene
1985
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TheC. elegansvitellogenin genes: short sequence repeats in the promoter regions and homology to the vertebrate genes
1985
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DELILA SYSTEM TOOLS
1984
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DNA - PROTEIN INTERACTIONS IN THE DROSOPHILA-VIRILIS MITOCHONDRIAL CHROMOSOME
1984
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INSITU ACTIVATION OF BIS-DIALKYLAMINOPHOSPHINES - A NEW METHOD FOR SYNTHESIZING DEOXYOLIGONUCLEOTIDES ON POLYMER SUPPORTS
1984
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NON-ALU FAMILY INTERSPERSED REPEATS IN HUMAN DNA AND THEIR TRANSCRIPTIONAL ACTIVITY
1984
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OLIGONUCLEOTIDE MUTAGENESIS OF THE LACPUV5 PROMOTER
1984
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STUDIES ON GENE-CONTROL REGIONS .15. METHYLPHOSPHONATES AS PROBES OF PROTEIN-NUCLEIC ACID INTERACTIONS
1984
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THE BACTERIOPHAGE-T4 REGA GENE - PRIMARY SEQUENCE OF A TRANSLATIONAL REPRESSOR
1984
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CHEMICAL SYNTHESIS AND BIOCHEMICAL REACTIVITY OF BACTERIOPHAGE-LAMBDA-PR PROMOTER
1983
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COLOR CODED TRIARYLMETHYL PROTECTING GROUPS USEFUL FOR DEOXYPOLYNUCLEOTIDE SYNTHESIS
1983
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DIFFERENT NUCLEOSOME SPACING IN TRANSCRIBED AND NON-TRANSCRIBED REGIONS OF THE RIBOSOMAL-RNA GENE IN TETRAHYMENA-THERMOPHILA
1983
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ORGANIZATION OF GENE AND NON-GENE SEQUENCES IN MICRONUCLEAR DNA OF OXYTRICHA-NOVA
1983
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TRANSCRIBED AND NON-TRANSCRIBED REGIONS OF TETRAHYMENA RIBOSOMAL GENE CHROMATIN HAVE DIFFERENT ACCESSIBILITIES TO MICROCOCCAL NUCLEASE
1983
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Role of the constant uridine in binding of yeast tRNAPhe anticodon arm to 30S ribosomes.
1982
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A DESIGN FOR COMPUTER NUCLEIC-ACID-SEQUENCE STORAGE, RETRIEVAL, AND MANIPULATION
1982
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THE INTERVENING SEQUENCE EXCISED FROM THE RIBOSOMAL-RNA PRECURSOR OF TETRAHYMENA CONTAINS A 5'-TERMINAL GUANOSINE RESIDUE NOT ENCODED BY THE DNA
1982
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USE OF THE PERCEPTRON ALGORITHM TO DISTINGUISH TRANSLATIONAL INITIATION SITES IN ESCHERICHIA-COLI
1982
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An unusual 5S rRNA, from Sulfolobus acidocaldarius, and its implications for a general 5S rRNA structure
1981
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REPLICATION OF THE EXTRACHROMOSOMAL RIBOSOMAL-RNA GENES OF TETRAHYMENA-THERMOPHILIA
1981
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STUDIES ON GENE-CONTROL REGIONS .10. EFFECT OF SPECIFIC ADENINE-THYMINE TRANSVERSIONS ON THE LAC REPRESSOR-LAC OPERATOR INTERACTION
1979
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STUDIES ON GENE-CONTROL REGIONS .12. FUNCTIONAL-SIGNIFICANCE OF A LAC OPERATOR CONSTITUTIVE MUTATION
1979
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The use of rifampicin to evaluate tRNA transcriptional organization in Escherichia coli
1979
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Reactions at the termini of tRNA with T4 RNA ligase.
1978
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Polynucleotide kinase from a T4 mutant which lacks the 3' phosphatase activity.
1978
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Equimolar addition of oligoribonucleotides with T4 RNA ligase.
1977
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STUDIES ON GENE CONTROL REGIONS .3. BINDING OF SYNTHETIC AND MODIFIED SYNTHETIC LAC OPERATOR DNAS TO LACTOSE REPRESSOR
1977
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STUDIES ON GENE CONTROL REGIONS .6. 5-METHYL OF THYMINE, A LAC REPRESSOR RECOGNITION SITE
1977
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Transcriptional organization of the 5.8S ribosomal RNA ristron in Xenopus laevis ribosomal DNA
1977
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MODEL FOR REPLICATION OF ENDS OF LINEAR CHROMOSOMES
1976
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Single and double box HMGB proteins differentially destabilize nucleosomes
2019
Research
keywords
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05 Environmental Sciences, 06 Biological Sciences, 08 Information and Computing Sciences