selected publications
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book
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conference proceeding
- Action at a distance along the microtubule couples kinesin motors. Biophysical Journal. 440A-440A. 2023
- Coordination without communication in ant excavation. Integrative and Comparative Biology. S16-S17. 2022
- Long-Range Coupling between Kinesins Regulates Collective Motor Behavior. Biophysical Journal. 289A-289A. 2021
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Mechanisms of Bidirectional Transport of Misaligned Chromosomes in Mitosis.
Biophysical Journal.
158A-158A.
2019
- A physical model for fission yeast mitosis: from spindle formation through chromosome segregation.. Molecular Biology of the Cell. 2018
- Active matter with intent: clog control in excavating collectives 2018
- Emergent Polar Organization and Bundling of Nematic Filaments Driven by Crosslinking Motors 2018
- Mechanisms of selective transport through nuclear pore complex mimics 2018
- Model of mitotic spindle self-assembly without motor proteins 2018
- Self-organized band state of driven hard needles 2018
- Mechanisms of Selective Transport through the Nuclear Pore Complex. Biophysical Journal. 428A-428A. 2018
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Minimal Ingredients for Coupled Spindle Assembly and Chromosome Bi-orientation in a Computational Model of Fission Yeast Mitosis.
Biophysical Journal.
650A-650A.
2018
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Organization and Dynamics of Gliding Flexible Filaments Jeffrey M. Moore.
Biophysical Journal.
650A-650A.
2018
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Synthetic Mimics of the Nuclear Pore Complex.
Biophysical Journal.
630A-631A.
2018
- Minimal ingredients for coupled spindle assembly and chromosome bi-orientation in a computational model of fission yeast mitosis.. Molecular Biology of the Cell. 2017
- The Effects of Microtubule Length, Dynamics and Bundling on Spindle Assembly.. Molecular Biology of the Cell. 2017
- Regulation of Mitotic Microtubule Dynamic Instability in Monopolar Spindles by Bundling and Kinetochore Attachment. The FASEB Journal. 2017
- Physical determinants of bipolar mitotic spindle assembly and stability. Molecular Biology of the Cell. 2016
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Improving representation in physical sciences using a departmental action team.
264-267.
2016
- Effects of Obstacle Binding and Bound Mobility in a Lattice Model of Protein Diffusion. Biophysical Journal. 596A-596A. 2016
- Effects of Obstacle Binding and Bound Mobility in a Lattice Model of Protein Diffusion. Biophysical Journal. 596A-596A. 2016
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Modeling the Microscopic to Macroscopic Dynamics of Actively Streaming Microtubule Suspensions.
Biophysical Journal.
351A-351A.
2014
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Physical Determinants of Bipolar Mitotic Spindle Assembly and Stability in Fission Yeast.
Biophysical Journal.
432A-432A.
2014
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Physical Effects Controlling Flock Formation in Systems of Self-Propelled Rods.
Biophysical Journal.
508A-508A.
2013
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The Role of Kinesin-8 Proteins in Kinetochore Movements and Spindle Dynamics in Fission Yeast.
Biophysical Journal.
327A-327A.
2013
- Accommodating drift in hidden Markov analysis of single-molecule data. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 2011
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Human TBP Bending of DNA Measured at the Single Molecule Level.
Biophysical Journal.
57A-57A.
2009
- PHYS 143-Using quantitative theory to help understand helicase unwinding. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 2008
- Control of TGF-beta/Smad signaling. Biophysical Journal. 647A-647A. 2007
- Elasticity of short DNA molecules: Quantitative agreement between theory and experiment. Biophysical Journal. 165A-165A. 2007
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journal article
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Mechanical Coupling With the Nuclear Envelope Shapes the; Schizosaccharomyces pombe; Mitotic Spindle.
Cytoskeleton.
40-52.
2026
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PRC1 resists microtubule sliding in two distinct resistive modes due to variations in the separation between overlapping microtubules.
Molecular Biology of the Cell.
2025
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Micron-scale protein transport along microtubules by kinesin-driven shepherding.
2025
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Kinesin-5/Cut7 C-terminal tail phosphorylation is essential for microtubule sliding force and bipolar mitotic spindle assembly.
Current Biology.
2024
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Bacterial efflux pump modulators prevent bacterial growth in macrophages and under broth conditions that mimic the host environment.
mBio.
2023
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Distinct regions of the kinesin-5 C-terminal tail are essential for mitotic spindle midzone localization and sliding force.
Proceedings of the National Academy of Sciences of the United States of America.
2023
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Bacterial Efflux Pump Modulators Prevent Bacterial Growth in Macrophages and Under Broth Conditions that Mimic the Host Environment.
2023
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Distinct regions of the kinesin-5 C-terminal tail are essential for mitotic spindle midzone localization and sliding force.
2023
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Quantifying Yeast Microtubules and Spindles Using the Toolkit for Automated Microtubule Tracking (TAMiT).
Biomolecules.
2023
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Agitated ants: regulation and self-organization of incipient nest excavation via collisional cues.
Journal of the Royal Society Interface.
2023
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The kinesin-5 protein Cut7 moves bidirectionally on fission yeast spindles with activity that increases in anaphase.
Journal of Cell Science.
2023
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Quantifying yeast microtubules and spindles using the Toolkit for Automated Microtubule Tracking (TAMiT).
2023
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Motor guidance by long-range communication on the microtubule highway.
Proceedings of the National Academy of Sciences of the United States of America.
2022
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Active Condensation of Filaments Under Spatial Confinement.
Frontiers in Physics.
2022
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Toward Task Capable Active Matter: Learning to Avoid Clogging in Confined Collectives via Collisions.
Frontiers in Physics.
2022
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Toward the cellular-scale simulation of motor-driven cytoskeletal assemblies.
eLife.
2022
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A new view of how cytoplasmic viscosity affects microtubule dynamics.
Developmental Cell.
419-420.
2022
- Motor guidance by long-range communication through the microtubule highway. Biophysical Journal. 400A-400A. 2022
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Modeling spatiotemporally varying protein-protein interactions in CyLaKS, the Cytoskeleton Lattice-based Kinetic Simulator.
European Physical Journal E.
2021
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Chiral self-sorting of active semiflexible filaments with intrinsic curvature.
Soft Matter.
4559-4565.
2021
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Comparison of explicit and mean-field models of cytoskeletal filaments with crosslinking motors.
European Physical Journal E.
2021
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Collective motion of driven semiflexible filaments tuned by soft repulsion and stiffness.
Soft Matter.
9436-9442.
2020
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Mechanisms of Chromosome biorientation and bipolar spindle assembly analyzed by computational modeling.
eLife.
2020
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Bound-State Diffusion due to Binding to Flexible Polymers in a Selective Biofilter.
Biophysical Journal.
376-385.
2020
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Design principles of selective transport through biopolymer barriers.
Physical Review E.
2019
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Theory of microtubule length regulation in antiparallel overlaps
2019
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Bound-state diffusion due to binding to flexible polymers in a selective biofilter
2019
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Design principles of selective transport through biopolymer barriers
2019
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Mechanisms of chromosome biorientation and bipolar spindle assembly analyzed by computational modeling
2019
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Theory of Cytoskeletal Reorganization during Cross-Linker-Mediated Mitotic Spindle Assembly.
Biophysical Journal.
1719-1731.
2019
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Theory of cytoskeletal reorganization during crosslinker-mediated mitotic spindle assembly
2018
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Collective clog control: Optimizing traffic flow in confined biological and robophysical excavation.
Science.
672-+.
2018
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Analytical structure, dynamics, and coarse graining of a kinetic model of an active fluid.
Physical Review Fluids.
2017
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Effects of soft interactions and bound mobility on diffusion in crowded environments: a model of sticky and slippery obstacles.
Physical Biology.
2017
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Kinesin-5-independent mitotic spindle assembly requires the antiparallel microtubule crosslinker Ase1 in fission yeast.
Nature Communications.
2017
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Contributions of Microtubule Dynamic Instability and Rotational Diffusion to Kinetochore Capture.
Biophysical Journal.
552-563.
2017
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Physical determinants of bipolar mitotic spindle assembly and stability in fission yeast.
Science Advances.
2017
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Kinesin-8 effects on mitotic microtubule dynamics contribute to spindle function in fission yeast.
Molecular Biology of the Cell.
3490-3514.
2016
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Phase-plane analysis of the totally asymmetric simple exclusion process with binding kinetics and switching between antiparallel lanes.
Physical Review E.
2016
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Motor Protein Accumulation on Antiparallel Microtubule Overlaps.
Biophysical Journal.
2034-2043.
2016
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Microscopic origins of anisotropic active stress in motor-driven nematic liquid crystals.
Soft Matter.
2676-2687.
2016
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Hysteresis, reentrance, and glassy dynamics in systems of self-propelled rods.
Physical Review E.
2015
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Multiscale modeling and simulation of microtubule-motor-protein assemblies.
Physical Review E.
2015
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Multiscale Polar Theory of Microtubule and Motor-Protein Assemblies.
Physical Review Letters.
2015
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Regulation of Chromosome Speeds in Mitosis.
Cellular and Molecular Bioengineering.
418-430.
2013
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Biophysics of filament length regulation by molecular motors.
Physical Biology.
2013
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Linear aggregation and liquid-crystalline order: comparison of Monte Carlo simulation and analytic theory.
Journal of Materials Chemistry.
10366-10383.
2010
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Microtubule Depolymerization by the Kinesin-8 Motor Kip3p: A Mathematical Model.
Biophysical Journal.
3050-3064.
2009
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Activating and inhibiting connections in biological network dynamics.
Biology Direct.
2008
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Two-state model for helicase translocation and unwinding of nucleic acids.
Physical Review E.
2008
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Multiple pattern matching: a Markov chain approach.
Journal of Mathematical Biology.
51-92.
2008
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Elasticity of short DNA molecules:: Theory and experiment for contour lengths of 0.6-7 μm.
Biophysical Journal.
4360-4373.
2007
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TFIIA changes the conformation of the DNA in TBP/TATA complexes and increases their kinetic stability.
Journal of Molecular Biology.
619-632.
2007
- PHYS 702-Elasticity of short DNA molecules: A combined experimental and theoretical study. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY. 2007
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Entropic elasticity of DNA with a permanent kink.
Macromolecules.
8816-8821.
2006
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Systems theory of Smad signalling.
IET Systems Biology.
412-424.
2006
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Using the nucleotide substitution rate matrix to detect horizontal gene transfer.
BMC Bioinformatics.
2006
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Incorporating expression data in metabolic modeling: A case study of lactate dehydrogenase.
Journal of Theoretical Biology.
464-474.
2006
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Controlled irradiative formation of penitentes.
Physical Review Letters.
2006
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Velocity and processivity of helicase unwinding of double-stranded nucleic acids.
Journal of Physics Condensed Matter.
S3851-S3869.
2005
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Opening of nucleic-acid double strands by helicases: Active versus passive opening (vol 71, pg 11904, 2005) - art. no. 029906.
Physical Review E.
2005
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Opening of nucleic-acid double strands by helicases: Active versus passive opening - art. no. 011904.
Physical Review E.
2005
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A motor that makes its own track: Helicase unwinding of DNA - art. no. 258103.
Physical Review Letters.
2003
- Helicase opening of duplex nucleic acids: active versus passive opening. Biophysical Journal. 13A-13A. 2003
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Collapsing bacterial cylinders - art. no. 061904.
Physical Review E.
2001
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Theory of structure formation in snowfields motivated by penitentes, suncups, and dirt cones - art. no. 056129.
Physical Review E.
2001
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Electrostatic Edge Instability of Lipid Membranes.
Physical Review Letters.
1598-1601.
1999
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Mechanical Coupling With the Nuclear Envelope Shapes the; Schizosaccharomyces pombe; Mitotic Spindle.
Cytoskeleton.
40-52.
2026