Environment and Public Health - Soil Microbiology
PubMed MeSh Term
Overview
subject area of
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18S rRNA gene amplicon sequencing combined with culture-based surveys of maize rhizosphere protists reveal dominant, plant-enriched and culturable community members Journal Article
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A Global Survey of Mycobacterial Diversity in Soil Journal Article
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A SIMPLE METHOD FOR QUANTIFYING ACTIVITY AND SURVIVAL OF MICROORGANISMS INVOLVED IN BIOREMEDIATION PROCESSES Journal Article
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A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses Journal Article
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A global atlas of the dominant bacteria found in soil Journal Article
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A new direct microscopy based method for evaluating in-situ bioremediation Journal Article
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A test of the hierarchical model of litter decomposition Journal Article
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Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska Journal Article
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Amino acid abundance and proteolytic potential in North American soils Journal Article
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Antarctic climate cooling and terrestrial ecosystem response Journal Article
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Applying population and community ecology theory to advance understanding of belowground biogeochemistry Journal Article
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Assembly of root-associated bacteria communities: interactions between abiotic and biotic factors Journal Article
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Assessment of soil microbial community structure by use of taxon-specific quantitative PCR assays Journal Article
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Bacterial community composition of divergent soil habitats in a polar desert Journal Article
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Bacterial phylogeny structures soil resistomes across habitats Journal Article
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Biogeochemical consequences of rapid microbial turnover and seasonal succession in soil Journal Article
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Biogeographic patterns in below-ground diversity in New York City's Central Park are similar to those observed globally Journal Article
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Biogeography and habitat modelling of high-alpine bacteria Journal Article
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Biogeography and landscape-scale diversity of the dominant crenarchaeota of soil Journal Article
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Biogeography of the cosmopolitan terrestrial diatom Hantzschia amphioxys sensu lato based on molecular and morphological data Journal Article
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Building a genome-based understanding of bacterial pH preferences Journal Article
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Can zoosporic true fungi grow or survive in extreme or stressful environments? Journal Article
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Carbon cycle confidence and uncertainty: Exploring variation among soil biogeochemical models Journal Article
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Causes and consequences of differences in soil and seed microbiomes for two alpine plants Journal Article
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Cell Size Distributions of Soil Bacterial and Archaeal Taxa Journal Article
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Changes in Bacterial and Fungal Communities across Compost Recipes, Preparation Methods, and Composting Times Journal Article
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Changes in assembly processes in soil bacterial communities following a wildfire disturbance Journal Article
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Changes in soil microbial community structure and function in an alpine dry meadow following spring snow melt Journal Article
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Characterization of growing bacterial populations in McMurdo Dry Valley soils through stable isotope probing with 18O-water Journal Article
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Climate change alters ecological strategies of soil bacteria Journal Article
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Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients Journal Article
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Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession Journal Article
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Consistent effects of nitrogen fertilization on soil bacterial communities in contrasting systems Journal Article
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Consistent responses of soil microbial communities to elevated nutrient inputs in grasslands across the globe Journal Article
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Continental-scale distributions of dust-associated bacteria and fungi Journal Article
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Cross-biome metagenomic analyses of soil microbial communities and their functional attributes Journal Article
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Cross-biome patterns in soil microbial respiration predictable from evolutionary theory on thermal adaptation Journal Article
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Decreases in average bacterial community rRNA operon copy number during succession Journal Article
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Digging the New York City Skyline: Soil Fungal Communities in Green Roofs and City Parks Journal Article
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Do bacterial and fungal communities assemble differently during primary succession? Journal Article
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Do plant-soil interactions influence how the microbial community responds to environmental change? Journal Article
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Dynamic trophic shifts in bacterial and eukaryotic communities during the first 30 years of microbial succession following retreat of an Antarctic glacier Journal Article
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Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons Journal Article
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Ectomycorrhizal-Dominated Boreal and Tropical Forests Have Distinct Fungal Communities, but Analogous Spatial Patterns across Soil Horizons Journal Article
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Effect of Dissolved Organic Carbon on the Transport and Attachment Behaviors of Cryptosporidium parvum oocysts and Carboxylate-Modified Microspheres Advected through Temperate Humic and Tropical Volcanic Agricultural soil Journal Article
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Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples Journal Article
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Effects of Spatial Variability and Relic DNA Removal on the Detection of Temporal Dynamics in Soil Microbial Communities Journal Article
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Elevational Constraints on the Composition and Genomic Attributes of Microbial Communities in Antarctic Soils Journal Article
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Embracing the unknown: disentangling the complexities of the soil microbiome Journal Article
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Endogenous methanogenesis stimulates oxidation of atmospheric CH4 in alpine tundra soil Journal Article
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Evidence that chytrids dominate fungal communities in high-elevation soils Journal Article
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Evolutionary histories of soil fungi are reflected in their large-scale biogeography Journal Article
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Examining the global distribution of dominant archaeal populations in soil Journal Article
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Experimental drought in a tropical rain forest increases soil carbon dioxide losses to the atmosphere Journal Article
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Factors Controlling Soil Microbial Biomass and Bacterial Diversity and Community Composition in a Cold Desert Ecosystem: Role of Geographic Scale Journal Article
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Fumarole-Supported Islands of Biodiversity within a Hyperarid, High-Elevation Landscape on Socompa Volcano, Puna de Atacama, Andes Journal Article
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Functional Shifts in Unvegetated, Perhumid, Recently-Deglaciated Soils Do Not Correlate with Shifts in Soil Bacterial Community Composition Journal Article
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Functional redundancy in local spatial scale microbial communities suggests stochastic processes at an urban wilderness preserve in Austin, TX, USA Journal Article
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Fungal Community Composition in Neotropical Rain Forests: the Influence of Tree Diversity and Precipitation Journal Article
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Fungal diversity regulates plant-soil feedbacks in temperate grassland Journal Article
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Genome reduction in an abundant and ubiquitous soil bacterium 'Candidatus Udaeobacter copiosus' Journal Article
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Genus-wide acid tolerance accounts for the biogeographical distribution of soil Burkholderia populations Journal Article
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Global Patterns and Climatic Controls of Dust-Associated Microbial Communities Journal Article
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Global gaps in soil biodiversity data Journal Article
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Global patterns in belowground communities Journal Article
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Global patterns in the biogeography of bacterial taxa Journal Article
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Growing-season length and soil microbes influence the performance of a generalist bunchgrass beyond its current range Journal Article
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Growth of cyanobacterial soil crusts during diurnal freeze-thaw cycles Journal Article
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Growth of high-elevation Cryptococcus sp during extreme freeze-thaw cycles Journal Article
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Heritable differences in abundance of bacterial rhizosphere taxa are correlated with fungal necrotrophic pathogen resistance Journal Article
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Hydrogen stable isotope probing of lipids demonstrates slow rates of microbial growth in soil Journal Article
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Identification and characterization of a novel anti-inflammatory lipid isolated from Mycobacterium vaccae, a soil-derived bacterium with immunoregulatory and stress resilience properties Journal Article
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Identifying the microbial taxa that consistently respond to soil warming across time and space Journal Article
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Infection with a Shoot-Specific Fungal Endophyte (EpichloA⟪) Alters Tall Fescue Soil Microbial Communities Journal Article
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Influence of drying-rewetting frequency on soil bacterial community structure Journal Article
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Integron diversity in heavy-metal-contaminated mine tailings and inferences about integron evolution Journal Article
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KINETICS OF PARA-NITROPHENOL MINERALIZATION BY A PSEUDOMONAS SP - EFFECTS OF 2ND SUBSTRATES Journal Article
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Life at extreme elevations on Atacama volcanoes: the closest thing to Mars on Earth? Journal Article
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Limited ecosystem recovery from simulated chronic nitrogen deposition Journal Article
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Linking bacterial community composition to soil salinity along environmental gradients Journal Article
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Links between plant litter chemistry, species diversity, and below-ground ecosystem function Journal Article
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MS2 Bacteriophage Reduction and Microbial Communities in Biosand Filters Journal Article
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Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil Journal Article
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Microbes do not follow the elevational diversity patterns of plants and animals Journal Article
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Microbes follow Humboldt: temperature drives plant and soil microbial diversity patterns from the Amazon to the Andes Journal Article
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Microbial Communities of High-Elevation Fumaroles, Penitentes, and Dry Tephra "Soils" of the Puna de Atacama Volcanic Zone Journal Article
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Microbial Nursery Production of High-Quality Biological Soil Crust Biomass for Restoration of Degraded Dryland Soils Journal Article
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Microbial activity and diversity during extreme freeze-thaw cycles in periglacial soils, 5400 m elevation, Cordillera Vilcanota, PerA(0) Journal Article
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Microbial aerosol liberation from soiled textiles isolated during routine residuals handling in a modern health care setting Journal Article
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Microbial community assembly and metabolic function during mammalian corpse decomposition Journal Article
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Microbial community dynamics and effect of environmental microbial reservoirs on red-backed salamanders (Plethodon cinereus) Journal Article
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Microbial community resemblance methods differ in their ability to detect biologically relevant patterns Journal Article
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Microbial community succession in an unvegetated, recently deglaciated soil Journal Article
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Microbial diversity in alpine tundra wet meadow soil: novel Chloroflexi from a cold, water-saturated environment Journal Article
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Microbial nitrogen limitation increases decomposition Journal Article
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Microbial responses to warming enhance soil carbon loss following translocation across a tropical forest elevation gradient Journal Article
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Molecular C dynamics downstream: The biochemical decomposition sequence and its impact on soil organic matter structure and function Journal Article
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Molecular and metabolic characterization of cold-tolerant alpine soil Pseudomonas sensu stricto Journal Article
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Molecular mechanisms underlying the close association between soil Burkholderia and fungi Journal Article
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NITROGEN DEPOSITION, PLANT CARBON ALLOCATION, AND SOIL MICROBES: CHANGING INTERACTIONS DUE TO ENRICHMENT Journal Article
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Niche and metabolic principles explain patterns of diversity and distribution: theory and a case study with soil bacterial communities Journal Article
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Nitrogen and phosphorus fertilization consistently favor pathogenic over mutualistic fungi in grassland soils Journal Article
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Nitrogen deposition alters plant-fungal relationships: linking belowground dynamics to aboveground vegetation change Journal Article
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Nutrient Addition Dramatically Accelerates Microbial Community Succession Journal Article
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Nutrient limitation of soil microbial activity during the earliest stages of ecosystem development Journal Article
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Optimizing the Production of Nursery-Based Biological Soil Crusts for Restoration of Arid Land Soils Journal Article
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Palaeoclimate explains a unique proportion of the global variation in soil bacterial communities Journal Article
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Phenolic-rich leaf carbon fractions differentially influence microbial respiration and plant growth Journal Article
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Phylogenetic Relationships and Functional Genes: Distribution of a Gene (mnxG) Encoding a Putative Manganese-Oxidizing Enzyme in Bacillus Species Journal Article
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Phylogenetic composition of Rocky Mountain endolithic microbial ecosystems Journal Article
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Phylogenetic conservatism in plant-soil feedback and its implications for plant abundance. Journal Article
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Plant community data from a statewide survey of paired serpentine and non-serpentine soils in California, USA Journal Article
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Plant diversity and density predict belowground diversity and function in an early successional alpine ecosystem Journal Article
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Plant diversity predicts beta but not alpha diversity of soil microbes across grasslands worldwide Journal Article
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Predicting the responsiveness of soil biodiversity to deforestation: a cross-biome study Journal Article
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Predicting the structure of soil communities from plant community taxonomy, phylogeny, and traits Journal Article
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Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale Journal Article
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Rapid temporal changes in root colonization by arbuscular mycorrhizal fungi and fine root endophytes, not dark septate endophytes, track plant activity and environment in an alpine ecosystem Journal Article
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Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States Journal Article
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Recovery of microbially mediated processes in soil augmented with a pentachlorophenol-mineralizing bacterium Journal Article
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Relating belowground microbial composition to the taxonomic, phylogenetic, and functional trait distributions of trees in a tropical forest Journal Article
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Relationships between Mycobactetium isolates from patients with pulmonary mycobacterial infection and potting soils Journal Article
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Responses of Soil Fungi to Logging and Oil Palm Agriculture in Southeast Asian Tropical Forests Journal Article
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Seasonal Variability in Bacterial and Fungal Diversity of the Near-Surface Atmosphere Journal Article
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Seasonal changes in an alpine soil bacterial community in the Colorado Rocky Mountains Journal Article
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Seasonal dynamics of previously unknown fungal lineages in tundra soils Journal Article
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Soil CO2 flux and photoautotrophic community composition in high-elevation, 'barren' soil Journal Article
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Soil Microbial Responses to Increased Moisture and Organic Resources along a Salinity Gradient in a Polar Desert Journal Article
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Soil bacterial and fungal communities across a pH gradient in an arable soil Journal Article
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Soil bacterial diversity in the Arctic is not fundamentally different from that found in other biomes Journal Article
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Spatial autocorrelation of microbial communities atop a debris-covered glacier is evidence of a supraglacial chronosequence Journal Article
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Spatial variability in airborne bacterial communities across land-use types and their relationship to the bacterial communities of potential source environments Journal Article
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Spatial variation in Streptomyces genetic composition and diversity in a prairie soil Journal Article
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Spatio-temporal dynamics of soil bacterial communities as a function of Amazon forest phenology Journal Article
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Structure and function of alpine and arctic soil microbial communities Journal Article
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Subsurface microbial diversity in deep-granitic-fracture water in Colorado Journal Article
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Teasing apart plant community responses to N enrichment: the roles of resource limitation, competition and soil microbes Journal Article
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Temporal variability in soil microbial communities across land-use types Journal Article
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Testing for differentiation of microbial communities using phylogenetic methods: Accounting for uncertainty of phylogenetic inference and character state mapping Journal Article
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Testing the functional significance of microbial community composition Journal Article
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The Biogeography of Ammonia-Oxidizing Bacterial Communities in Soil Journal Article
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The Future of Environmental DNA in Forensic Science Journal Article
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The Rhizosphere Responds: Rich Fen Peat and Root Microbial Ecology after Long-Term Water Table Manipulation Journal Article
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The Role of Phosphorus Limitation in Shaping Soil Bacterial Communities and Their Metabolic Capabilities Journal Article
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The amphibian skin-associated microbiome across species, space and life history stages Journal Article
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The disappearing periglacial ecosystem atop Mt. Kilimanjaro supports both cosmopolitan and endemic microbial communities Journal Article
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The diversity and biogeography of soil bacterial communities Journal Article
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The earliest stages of ecosystem succession in high-elevation (5000 metres above sea level), recently deglaciated soils Journal Article
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The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling Journal Article
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The effects of tree rhizodeposition on soil exoenzyme activity, dissolved organic carbon, and nutrient availability in a subalpine forest ecosystem Journal Article
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The global-scale distributions of soil protists and their contributions to belowground systems Journal Article
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The interplay between microbial communities and soil properties Journal Article
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The pervasive and multifaceted influence of biocrusts on water in the world's drylands. Journal Article
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The rate and pattern of cladogenesis in microbes Journal Article
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Toward an ecological classification of soil bacteria Journal Article
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USE OF A PENTACHLOROPHENOL DEGRADING BACTERIUM TO BIOREMEDIATE HIGHLY CONTAMINATED SOIL Journal Article
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Using network analysis to explore co-occurrence patterns in soil microbial communities Journal Article
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Using null models to infer microbial co-occurrence networks Journal Article
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Variable influences of soil and seed-associated bacterial communities on the assembly of seedling microbiomes Journal Article
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Volatile organic compounds from leaf litter decomposition alter soil microbial communities and carbon dynamics Journal Article
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When and where plant-soil feedback may promote plant coexistence: a meta-analysis Journal Article
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Why are some microbes more ubiquitous than others? Predicting the habitat breadth of soil bacteria Journal Article
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Widespread occurrence and phylogenetic placement of a soil clone group adds a prominent new branch to the fungal tree of life Journal Article
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Winter forest soil respiration controlled by climate and microbial community composition Journal Article
broader concept