publication venue for
- Internal and external normalization of nascent RNA sequencing run-on experiments 2024
- disperseNN2: a neural network for estimating dispersal distance from georeferenced polymorphism data 2023
- Denoising large-scale biological data using network filters 2021
- Stochastic Lanczos estimation of genomic variance components for linear mixed-effects models 2019
- Model based heritability scores for high-throughput sequencing data 2017
- Exploring community structure in biological networks with random graphs 2014
- Systematic calibration of a cell signaling network model 2010
- Stability analysis of the GAL regulatory network in Saccharomyces cerevisiae and Kluyveromyces lactis 2010
- Comparison of methods for estimating the nucleotide substitution matrix 2008
- Improved machine learning method for analysis of gas phase chemistry of peptides 2008
- Semantic role labeling for protein transport predicates 2008
- An open-source representation for 2-DE-centric proteomics and support infrastructure for data storage and analysis 2008
- Using the nucleotide substitution rate matrix to detect horizontal gene transfer 2006
- Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints 2006
- Fast-Find: A novel computational approach to analyzing combinatorial motifs 2006
- Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction 2004
- The Distributed Annotation System 2001