selected publications
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conference proceeding
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journal article
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Oral vitamin B12 supplement is delivered to the distal gut, altering the corrinoid profile and selectively depleting Bacteroides in C57BL/6 mice..
Gut Microbes.
654-662.
2019
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Investigation of bacterial repopulation after sinus surgery and perioperative antibiotics.
International Forum of Allergy and Rhinology.
34-40.
2016
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Microbial aerosol liberation from soiled textiles isolated during routine residuals handling in a modern health care setting.
Microbiome.
2015
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Sinus microbiota varies among chronic rhinosinusitis phenotypes and predicts surgical outcome.
Journal of Allergy and Clinical Immunology.
334-+.
2015
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Effects of Vaccination with 10-Valent Pneumococcal Non-Typeable Haemophilus influenza Protein D Conjugate Vaccine (PHiD-CV) on the Nasopharyngeal Microbiome of Kenyan Toddlers.
PLoS One.
2015
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Esophageal Microbiome in Eosinophilic Esophagitis.
PLoS One.
2015
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Effect of monochloramine treatment on the microbial ecology of Legionella and associated bacterial populations in a hospital hot water system.
Systematic and Applied Microbiology.
198-205.
2015
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High-Resolution Microbial Community Succession of Microbially Induced Concrete Corrosion in Working Sanitary Manholes.
PLoS One.
2015
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Intestinal Lesions Are Associated with Altered Intestinal Microbiome and Are More Frequent in Children and Young Adults with Cystic Fibrosis and Cirrhosis.
PLoS One.
2015
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Assessment of Airway Microbiota and Inflammation in Cystic Fibrosis Using Multiple Sampling Methods.
Annals of the American Thoracic Society.
221-229.
2015
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Molecular analysis of single room humidifier bacteriology.
Water Research.
318-327.
2015
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Sinus culture poorly predicts resident microbiota.
International Forum of Allergy and Rhinology.
3-9.
2015
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Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples.
Journal of Visualized Experiments.
2014
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Microbial diversity in a Venezuelan orthoquartzite cave is dominated by the Chloroflexi (Class Ktedonobacterales) and Thaumarchaeota Group I.1c.
Frontiers in Microbiology.
2014
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Novosphingobium and Its Potential Role in Chronic Obstructive Pulmonary Diseases: Insights from Microbiome Studies.
PLoS One.
2014
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Specific Microbiome Changes in a Mouse Model of Parenteral Nutrition Associated Liver Injury and Intestinal Inflammation.
PLoS One.
2014
- AIRWAY MICROBIOTA DETECTED FROM CLINICALLY OBTAINED BRONCHOALVEOLAR LAVAGE FLUID SAMPLES FROM CF PATIENTS AND DISEASE CONTROLS. Pediatric Pulmonology. 322-323. 2014
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The Effect of PPI Use on Human Gut Microbiota and Weight Loss in Patients Undergoing Laparoscopic Roux-en-Y Gastric Bypass.
Obesity Surgery.
1567-1571.
2014
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An altered intestinal mucosal microbiome in HIV-1 infection is associated with mucosal and systemic immune activation and endotoxemia.
Mucosal Immunology.
983-994.
2014
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Carbon Dioxide and Hydrogen Sulfide Associations with Regional Bacterial Diversity Patterns in Microbially Induced Concrete Corrosion.
Environmental Science and Technology (Washington).
7357-7364.
2014
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Molecular analysis of point-of-use drinking water microbiology (vol 49, pg 225, 2014).
Water Research.
367-367.
2014
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Induction of Diabetes in the RIP-B7.1 Mouse Model Is Critically Dependent on TLR3 and MyD88 Pathways and Is Associated With Alterations in the Intestinal Microbiome.
Diabetes.
619-631.
2014
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Molecular analysis of point-of-use municipal drinking water microbiology.
Water Research.
225-235.
2014
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The Microbiome of the Middle Meatus in Healthy Adults.
PLoS One.
2013
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Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data.
Bioinformatics.
3100-3101.
2013
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The Effects of Airway Microbiome on Corticosteroid Responsiveness in Asthma.
American Journal of Respiratory and Critical Care Medicine.
1193-1201.
2013
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Effects of Different Complementary Feeding Regimens on Iron Status and Enteric Microbiota in Breastfed Infants.
Journal of Pediatrics.
416-+.
2013
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Molecular Analysis of Bacterial and Circovirus Bioaerosols in Concentrated Animal Feeding Operations.
Aerosol Science and Technology.
755-766.
2013
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Culture-Independent Analysis of Aerosol Microbiology in a Metropolitan Subway System.
Applied and Environmental Microbiology.
3485-3493.
2013
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Inflammation and Airway Microbiota during Cystic Fibrosis Pulmonary Exacerbations.
PLoS One.
2013
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Sex Differences in the Gut Microbiome Drive Hormone-Dependent Regulation of Autoimmunity.
Science.
1084-1088.
2013
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The role of the intestinal microbiota in type 1 diabetes.
Clinical Immunology.
112-119.
2013
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Phylogenetic stratigraphy in the Guerrero Negro hypersaline microbial mat.
The ISME Journal: multidisciplinary journal of microbial ecology.
50-60.
2013
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Prevention of Virus-Induced Type 1 Diabetes with Antibiotic Therapy.
Journal of Immunology.
3805-3814.
2012
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Novel Device to Sample the Esophageal Microbiome-The Esophageal String Test.
PLoS One.
2012
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Phototrophic Phylotypes Dominate Mesothermal Microbial Mats Associated with Hot Springs in Yellowstone National Park.
Microbial Ecology: an international journal.
162-170.
2012
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Host Genes Related to Paneth Cells and Xenobiotic Metabolism Are Associated with Shifts in Human Ileum-Associated Microbial Composition.
PLoS One.
2012
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Inflammatory Bowel Diseases Phenotype, C. difficile and NOD2 Genotype Are Associated with Shifts in Human Ileum Associated Microbial Composition.
PLoS One.
2012
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Generation and Analysis of a Mouse Intestinal Metatranscriptome through Illumina Based RNA-Sequencing.
PLoS One.
2012
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Microbiome complexity and Staphylococcus aureus in chronic rhinosinusitis.
The Laryngoscope.
467-472.
2012
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Molecular Identification of Bacteria in Tracheal Aspirate Fluid from Mechanically Ventilated Preterm Infants.
PLoS One.
2011
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Application of Two-Part Statistics for Comparison of Sequence Variant Counts.
PLoS One.
2011
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Disease Phenotype and Genotype Are Associated with Shifts in Intestinal-associated Microbiota in Inflammatory Bowel Diseases.
Inflammatory Bowel Diseases.
179-184.
2011
- RELATIONSHIP BETWEEN LUNG MICROBIOME, LUNG FUNCTION AND INFLAMMATION DURING TREATMENT OF CF PULMONARY EXACERBATION. Pediatric Pulmonology. 306-306. 2011
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Diversity and Stratification of Archaea in a Hypersaline Microbial Mat.
Applied and Environmental Microbiology.
1801-1810.
2009
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Microbial community biofabrics in a geothermal mine adit.
Applied and Environmental Microbiology.
6172-6180.
2007
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Electron microscopy of Archaea.
Methods in Cell Biology.
169-191.
2007
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Phylogenetic diversity and ecology of environmental Archaea.
Current Opinion in Microbiology.
638-642.
2005
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Oral vitamin B12 supplement is delivered to the distal gut, altering the corrinoid profile and selectively depleting Bacteroides in C57BL/6 mice..
Gut Microbes.
654-662.
2019