Microbiological Phenomena - Microbiota | CU Experts

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Heliconius Butterflies Host Characteristic and Phylogenetically Structured Adult-Stage Microbiomes Journal Article
A Global Survey of Mycobacterial Diversity in Soil Journal Article
A Metagenomic Investigation of Spatial and Temporal Changes in Sewage Microbiomes across a University Campus Journal Article
A communal catalogue reveals Earth's multiscale microbial diversity Journal Article
A dynamic microbial sulfur cycle in a serpentinizing continental ophiolite Journal Article
A global metagenomic map of urban microbiomes and antimicrobial resistance Journal Article
A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system Journal Article
A phylogenetic model for the recruitment of species into microbial communities and application to studies of the human microbiome Journal Article
Advancing Our Understanding of the Human Microbiome Using QIIME Journal Article
Altered Microbiome Leads to Significant Phenotypic and Transcriptomic Differences in a Lipid Accumulating Chlorophyte Journal Article
An altered intestinal mucosal microbiome in HIV-1 infection is associated with mucosal and systemic immune activation and endotoxemia Journal Article
An empirically derived method for measuring human gut microbiome alpha diversity: Demonstrated utility in predicting health-related outcomes among a human clinical sample Journal Article
An oligotrophic deep-subsurface community dependent on syntrophy is dominated by sulfur-driven autotrophic denitrifiers Journal Article
Assessment of Airway Microbiota and Inflammation in Cystic Fibrosis Using Multiple Sampling Methods Journal Article
Association between the oral microbiome and brain resting state connectivity in smokers Journal Article
Bacterial Biofilm Thickness and Fungal Inhibitory Bacterial Richness Both Prevent Establishment of the Amphibian Fungal Pathogen Batrachochytrium dendrobatidis Journal Article
Bacterial and archaeal lipids trace chemo(auto)trophy along the redoxcline in Vancouver Island fjords Journal Article
Bidirectional gut-microbial mediated-brain signaling: A new player in stress physiology? (Commentary on O'Mahoney et al., 2019) Journal Article
Can we manipulate the soil microbiome to promote carbon sequestration in croplands? Journal Article
Captivity, Reintroductions, and the Rewilding of Amphibian-associated Bacterial Communities Journal Article
Carbonate facies-specific stable isotope data record climate, hydrology, and microbial communities in Great Salt Lake, UT Journal Article
Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment Journal Article
Causes and consequences of differences in soil and seed microbiomes for two alpine plants Journal Article
Characterization of the public transit air microbiome and resistome reveals geographical specificity Journal Article
Chronic stress and captivity alter the cloacal microbiome of a wild songbird Journal Article
Cohabiting family members share microbiota with one another and with their dogs Journal Article
Community richness of amphibian skin bacteria correlates with bioclimate at the global scale Journal Article
Comparison of Standard Culture-Based Method to Culture-Independent Method for Evaluation of Hygiene Effects on the Hand Microbiome Journal Article
Consistent changes in the taxonomic structure and functional attributes of bacterial communities during primary succession Journal Article
Consistent spatial patterns in microbial taxa of red squirrel gut microbiomes Journal Article
Convergence of gut microbiomes in myrmecophagous mammals Journal Article
Cross-biome patterns in soil microbial respiration predictable from evolutionary theory on thermal adaptation Journal Article
Dietary Nitrate and Nitric Oxide Metabolism: Mouth, Circulation, Skeletal Muscle, and Exercise Performance Journal Article
Diversity and evolution of the primate skin microbiome Journal Article
Diversity decoupled from sulfur isotope fractionation in a sulfate-reducing microbial community Journal Article
Diversity of gut microbiome in Rocky Mountainsnail across its native range Journal Article
Diversity patterns of microbial eukaryotes mirror those of bacteria in Antarctic cryoconite holes Journal Article
Do plant-soil interactions influence how the microbial community responds to environmental change? Journal Article
Dynamic trophic shifts in bacterial and eukaryotic communities during the first 30 years of microbial succession following retreat of an Antarctic glacier Journal Article
Early-life exercise may promote lasting brain and metabolic health through gut bacterial metabolites Journal Article
Ecological Correlates of Large-Scale Turnover in the Dominant Members of Pseudacris crucifer Skin Bacterial Communities Journal Article
Effects of Spatial Variability and Relic DNA Removal on the Detection of Temporal Dynamics in Soil Microbial Communities Journal Article
Effects of Vaccination with 10-Valent Pneumococcal Non-Typeable Haemophilus influenza Protein D Conjugate Vaccine (PHiD-CV) on the Nasopharyngeal Microbiome of Kenyan Toddlers Journal Article
Elevational Constraints on the Composition and Genomic Attributes of Microbial Communities in Antarctic Soils Journal Article
Embracing the unknown: disentangling the complexities of the soil microbiome Journal Article
Esophageal Microbiome in Eosinophilic Esophagitis Journal Article
Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data Journal Article
Exploring Service Dogs for Rehabilitation of Veteran With PTSD: A Microbiome Perspective Journal Article
Extracellular Metabolism Sets the Table for Microbial Cross-Feeding Journal Article
Feasibility of collection and analysis of microbiome data in a longitudinal randomized trial of community gardening Journal Article
Fecal Microbiomes of Non-Human Primates in Western Uganda Reveal Species-Specific Communities Largely Resistant to Habitat Perturbation Journal Article
Finding intestinal fortitude: Integrating the microbiome into a holistic view of depression mechanisms, treatment, and resilience Journal Article
Functional redundancy in local spatial scale microbial communities suggests stochastic processes at an urban wilderness preserve in Austin, TX, USA Journal Article
Genetic influences on the human oral microbiome Journal Article
Global Patterns and Climatic Controls of Dust-Associated Microbial Communities Journal Article
Glucocorticoids coordinate changes in gut microbiome composition in wild North American red squirrels Journal Article
Gut microbiome composition and metabolomic profiles of wild western lowland gorillas (Gorilla gorilla gorilla) reflect host ecology Journal Article
Gut microbiome of century-old snail specimens stable across time in preservation Journal Article
Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes Journal Article
Host identity is the dominant factor in the assembly of nematode and tardigrade gut microbiomes in Antarctic Dry Valley streams Journal Article
Human microbiome transfer in the built environment differs based on occupants, objects, and buildings Journal Article
Hygiene and other early childhood influences on the subsequent function of the immune system Journal Article
Identifying fungal-host associations in an amphibian host system Journal Article
Impacts of Plant-Based Foods in Ancestral Hominin Diets on the Metabolism and Function of Gut Microbiota In Vitro Journal Article
Inhibitory bacteria reduce fungi on early life stages of endangered Colorado boreal toads (Anaxyrus boreas) Journal Article
Investigation of bacterial repopulation after sinus surgery and perioperative antibiotics Journal Article
Lambda Interferon Restructures the Nasal Microbiome and Increases Susceptibility to Staphylococcus aureus Superinfection Journal Article
Large Comparative Analyses of Primate Body Site Microbiomes Indicate that the Oral Microbiome Is Unique among All Body Sites and Conserved among Nonhuman Primates Journal Article
Leaf side determines the relative importance of dispersal versus host filtering in the phyllosphere microbiome Journal Article
Learning representations of microbe-metabolite interactions. Journal Article
Linking bacterial community composition to soil salinity along environmental gradients Journal Article
Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets Journal Article
Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome Journal Article
Metamorphosis of a Butterfly-Associated Bacterial Community Journal Article
Microbial "old friends', immunoregulation and socioeconomic status Journal Article
Microbial Communities of High-Elevation Fumaroles, Penitentes, and Dry Tephra "Soils" of the Puna de Atacama Volcanic Zone Journal Article
Microbial community shifts in streams receiving treated wastewater effluent Journal Article
Microbial diversity of an Antarctic subglacial community and high-resolution replicate sampling inform hydrological connectivity in a polar desert Journal Article
Microbial residence time is a controlling parameter of the taxonomic composition and functional profile of microbial communities Journal Article
Microbiome analyses of blood and tissues suggest cancer diagnostic approach Journal Article
Microbiome of Affected and Unaffected Skin of Patients With Atopic Dermatitis Before and After Emollient Treatment Journal Article
Microbiota, Immunoregulatory Old Friends and Psychiatric Disorders Journal Article
Military-Related Exposures, Social Determinants of Health, and Dysbiosis: The United States-Veteran Microbiome Project (US-VMP) Journal Article
Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention Journal Article
Niche and metabolic principles explain patterns of diversity and distribution: theory and a case study with soil bacterial communities Journal Article
Nine (not so simple) steps: a practical guide to using machine learning in microbial ecology Journal Article
Nitrogen Enrichment during Soil Organic Matter Burning and Molecular Evidence of Maillard Reactions Journal Article
Non-lithifying microbial ecosystem dissolves peritidal lime sand Journal Article
Novel bacterial lineages associated with boreal moss species Journal Article
Novosphingobium and Its Potential Role in Chronic Obstructive Pulmonary Diseases: Insights from Microbiome Studies Journal Article
Nutrient Addition Dramatically Accelerates Microbial Community Succession Journal Article
Of poisons and parasites-the defensive role of tetrodotoxin against infections in newts Journal Article
Optimizing the Production of Nursery-Based Biological Soil Crusts for Restoration of Arid Land Soils Journal Article
Palaeoclimate explains a unique proportion of the global variation in soil bacterial communities Journal Article
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer Journal Article
Predicting fungal infection rate and severity with skin-associated microbial communities on amphibians Journal Article
Predicting the responsiveness of soil biodiversity to deforestation: a cross-biome study Journal Article
Primate vaginal microbiomes exhibit species specificity without universal Lactobacillus dominance Journal Article
Probiotic treatment restores protection against lethal fungal infection lost during amphibian captivity Journal Article
Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples Journal Article
Quantifying human impact on Earth's microbiome Journal Article
Refining the Application of Microbial Lipids as Tracers of Staphylococcus aureus Growth Rates in Cystic Fibrosis Sputum Journal Article
Relating Metatranscriptomic Profiles to the Micropollutant Biotransformation Potential of Complex Microbial Communities Journal Article
Relating belowground microbial composition to the taxonomic, phylogenetic, and functional trait distributions of trees in a tropical forest Journal Article
Relationship between dissolved organic matter quality and microbial community composition across polar glacial environments Journal Article
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Journal Article
Review of human hand microbiome research Journal Article
Single-Stranded DNA Viruses in Antarctic Cryoconite Holes Journal Article
Sinus culture poorly predicts resident microbiota Journal Article
Sinus microbiota varies among chronic rhinosinusitis phenotypes and predicts surgical outcome Journal Article
Skin Microbiome in Patients With Psoriasis Before and After Balneotherapy at the Thermal Care Center of La Roche-Posay Journal Article
Skin microbiome and acne vulgaris: Staphylococcus, a new actor in acne Journal Article
Spatial autocorrelation of microbial communities atop a debris-covered glacier is evidence of a supraglacial chronosequence Journal Article
Spatial patterning of soil microbial communities created by fungus-farming termites Journal Article
Spatio-temporal dynamics of soil bacterial communities as a function of Amazon forest phenology Journal Article
Specific Microbiome Changes in a Mouse Model of Parenteral Nutrition Associated Liver Injury and Intestinal Inflammation Journal Article
Statistical Learning and Uncommon Soil Microbiota Explain Biogeochemical Responses after Wildfire Journal Article
Strong Dispersal Limitation of Microbial Communities at Shackleton Glacier, Antarctica Journal Article
Structure of bacterial and eukaryote communities reflect in situ controls on community assembly in a high-alpine lake Journal Article
Succession of toxicity and microbiota in hydraulic fracturing flowback and produced water in the Denver-Julesburg Basin Journal Article
Sulfur cycling at natural hydrocarbon and sulfur seeps in Santa Paula Creek, CA Journal Article
Tales from the tomb: the microbial ecology of exposed rock surfaces Journal Article
Temporal variability is a personalized feature of the human microbiome Journal Article
The Sphagnum microbiome: new insights from an ancient plant lineage Journal Article
The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions Journal Article
The Effect of PPI Use on Human Gut Microbiota and Weight Loss in Patients Undergoing Laparoscopic Roux-en-Y Gastric Bypass Journal Article
The Effects of Airway Microbiome on Corticosteroid Responsiveness in Asthma Journal Article
The Future of Environmental DNA in Forensic Science Journal Article
The Gut Microbiota Appears to Compensate for Seasonal Diet Variation in the Wild Black Howler Monkey (Alouatta pigra) Journal Article
The Microbiome of the Built Environment and Human Behavior: Implications for Emotional Health and Well-Being in Postmodern Western Societies Journal Article
The Microbiome of the Middle Meatus in Healthy Adults Journal Article
The Microbiota, Immunoregulation, and Mental Health: Implications for Public Health. Journal Article
The Primate Vaginal Microbiome: Comparative Context and Implications for Human Health and Disease Journal Article
The Rhizosphere Responds: Rich Fen Peat and Root Microbial Ecology after Long-Term Water Table Manipulation Journal Article
The Role of Gut Microbes in Satisfying the Nutritional Demands of Adult and Juvenile Wild, Black Howler Monkeys (Alouatta pigra) Journal Article
The Treatment-Naive Microbiome in New-Onset Crohn's Disease Journal Article
The amphibian skin-associated microbiome across species, space and life history stages Journal Article
The disappearing periglacial ecosystem atop Mt. Kilimanjaro supports both cosmopolitan and endemic microbial communities Journal Article
The diversity and function of sourdough starter microbiomes Journal Article
The global-scale distributions of soil protists and their contributions to belowground systems Journal Article
The influence of soil age on ecosystem structure and function across biomes Journal Article
The interplay between microbial communities and soil properties Journal Article
The microbiome of the built environment and mental health Conference Proceeding
Tracking down the sources of experimental contamination in microbiome studies Journal Article
Treating cattle with antibiotics affects greenhouse gas emissions, and microbiota in dung and dung beetles Journal Article
Twenty Important Research Questions in Microbial Exposure and Social Equity Journal Article
Using null models to infer microbial co-occurrence networks Journal Article
Variable influences of soil and seed-associated bacterial communities on the assembly of seedling microbiomes Journal Article
Variable responses of human and non-human primate gut microbiomes to a Western diet Journal Article
Variation of near surface atmosphere microbial communities at an urban and a suburban site in Philadelphia, PA, USA Journal Article
Variations in the microbiome due to storage preservatives are not large enough to obscure variations due to factors such as host population, host species, body site, and captivity Journal Article
Volatile organic compounds from leaf litter decomposition alter soil microbial communities and carbon dynamics Journal Article
Walls talk: Microbial biogeography of homes spanning urbanization Journal Article

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